Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20470 and BWI76_RS20475 are separated by 62 nucleotides BWI76_RS20475 and BWI76_RS20480 are separated by 257 nucleotides
BWI76_RS20470: BWI76_RS20470 - long-chain fatty acid transporter, at 4,285,088 to 4,286,452
_RS20470
BWI76_RS20475: BWI76_RS20475 - phospholipid-binding lipoprotein MlaA, at 4,286,515 to 4,287,276
_RS20475
BWI76_RS20480: BWI76_RS20480 - formate/nitrite transporter, at 4,287,534 to 4,288,430
_RS20480
Position (kb) 4286
4287
4288 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4285.936 kb on - strand, within BWI76_RS20470 at 4285.936 kb on - strand, within BWI76_RS20470 at 4286.048 kb on + strand, within BWI76_RS20470 at 4286.057 kb on + strand, within BWI76_RS20470 at 4286.161 kb on - strand, within BWI76_RS20470 at 4286.189 kb on - strand, within BWI76_RS20470 at 4286.558 kb on + strand at 4286.807 kb on - strand, within BWI76_RS20475 at 4287.003 kb on + strand, within BWI76_RS20475 at 4287.101 kb on + strand, within BWI76_RS20475 at 4287.126 kb on - strand, within BWI76_RS20475 at 4287.163 kb on + strand, within BWI76_RS20475 at 4287.474 kb on + strand at 4287.557 kb on - strand at 4287.646 kb on - strand, within BWI76_RS20480 at 4287.713 kb on - strand, within BWI76_RS20480 at 4287.715 kb on - strand, within BWI76_RS20480 at 4287.853 kb on + strand, within BWI76_RS20480 at 4288.041 kb on - strand, within BWI76_RS20480 at 4288.213 kb on - strand, within BWI76_RS20480 at 4288.216 kb on + strand, within BWI76_RS20480 at 4288.254 kb on + strand, within BWI76_RS20480
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 4,285,936 - BWI76_RS20470 0.62 -1.4 4,285,936 - BWI76_RS20470 0.62 -0.4 4,286,048 + BWI76_RS20470 0.70 -0.5 4,286,057 + BWI76_RS20470 0.71 -0.2 4,286,161 - BWI76_RS20470 0.79 -0.8 4,286,189 - BWI76_RS20470 0.81 +0.1 4,286,558 + -2.4 4,286,807 - BWI76_RS20475 0.38 +0.1 4,287,003 + BWI76_RS20475 0.64 -2.9 4,287,101 + BWI76_RS20475 0.77 -0.2 4,287,126 - BWI76_RS20475 0.80 -1.4 4,287,163 + BWI76_RS20475 0.85 -2.1 4,287,474 + -1.9 4,287,557 - -0.9 4,287,646 - BWI76_RS20480 0.12 -0.1 4,287,713 - BWI76_RS20480 0.20 -0.3 4,287,715 - BWI76_RS20480 0.20 -0.8 4,287,853 + BWI76_RS20480 0.36 -0.4 4,288,041 - BWI76_RS20480 0.57 +1.0 4,288,213 - BWI76_RS20480 0.76 +0.0 4,288,216 + BWI76_RS20480 0.76 -0.3 4,288,254 + BWI76_RS20480 0.80 -0.6
Or see this region's nucleotide sequence