Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29200

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS29190 and RR42_RS29195 are separated by 50 nucleotidesRR42_RS29195 and RR42_RS29200 are separated by 109 nucleotidesRR42_RS29200 and RR42_RS29205 overlap by 4 nucleotides RR42_RS29190: RR42_RS29190 - isomerase, at 1,906,250 to 1,906,672 _RS29190 RR42_RS29195: RR42_RS29195 - short-chain dehydrogenase, at 1,906,723 to 1,907,508 _RS29195 RR42_RS29200: RR42_RS29200 - lipoprotein, at 1,907,618 to 1,908,157 _RS29200 RR42_RS29205: RR42_RS29205 - hypothetical protein, at 1,908,154 to 1,909,389 _RS29205 Position (kb) 1907 1908 1909Strain fitness (log2 ratio) -1 0 1at 1906.641 kb on + strandat 1906.774 kb on + strandat 1906.953 kb on - strand, within RR42_RS29195at 1906.985 kb on + strand, within RR42_RS29195at 1907.057 kb on + strand, within RR42_RS29195at 1907.057 kb on + strand, within RR42_RS29195at 1907.058 kb on - strand, within RR42_RS29195at 1907.058 kb on - strand, within RR42_RS29195at 1907.135 kb on + strand, within RR42_RS29195at 1907.138 kb on + strand, within RR42_RS29195at 1907.138 kb on + strand, within RR42_RS29195at 1907.139 kb on - strand, within RR42_RS29195at 1907.707 kb on - strand, within RR42_RS29200at 1907.707 kb on - strand, within RR42_RS29200at 1907.707 kb on - strand, within RR42_RS29200at 1907.733 kb on + strand, within RR42_RS29200at 1907.733 kb on + strand, within RR42_RS29200at 1907.734 kb on - strand, within RR42_RS29200at 1907.734 kb on - strand, within RR42_RS29200at 1907.734 kb on - strand, within RR42_RS29200at 1907.734 kb on - strand, within RR42_RS29200at 1907.766 kb on + strand, within RR42_RS29200at 1907.767 kb on - strand, within RR42_RS29200at 1907.899 kb on - strand, within RR42_RS29200at 1907.899 kb on - strand, within RR42_RS29200at 1907.918 kb on + strand, within RR42_RS29200at 1907.954 kb on + strand, within RR42_RS29200at 1908.101 kb on + strand, within RR42_RS29200at 1908.112 kb on - strandat 1908.113 kb on + strandat 1908.113 kb on + strandat 1908.114 kb on - strandat 1908.114 kb on - strandat 1908.293 kb on + strand, within RR42_RS29205at 1908.372 kb on - strand, within RR42_RS29205at 1908.372 kb on - strand, within RR42_RS29205at 1908.626 kb on + strand, within RR42_RS29205at 1908.626 kb on + strand, within RR42_RS29205at 1908.627 kb on - strandat 1908.627 kb on - strand, within RR42_RS29205at 1908.697 kb on - strand, within RR42_RS29205at 1908.731 kb on + strand, within RR42_RS29205at 1908.732 kb on - strand, within RR42_RS29205at 1909.037 kb on + strand, within RR42_RS29205

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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1,906,641 + -1.1
1,906,774 + -1.3
1,906,953 - RR42_RS29195 0.29 -0.6
1,906,985 + RR42_RS29195 0.33 -0.7
1,907,057 + RR42_RS29195 0.42 -0.3
1,907,057 + RR42_RS29195 0.42 -1.0
1,907,058 - RR42_RS29195 0.43 -0.3
1,907,058 - RR42_RS29195 0.43 +0.6
1,907,135 + RR42_RS29195 0.52 -1.3
1,907,138 + RR42_RS29195 0.53 -0.4
1,907,138 + RR42_RS29195 0.53 +1.0
1,907,139 - RR42_RS29195 0.53 -0.4
1,907,707 - RR42_RS29200 0.16 -0.3
1,907,707 - RR42_RS29200 0.16 +0.4
1,907,707 - RR42_RS29200 0.16 -0.5
1,907,733 + RR42_RS29200 0.21 +0.3
1,907,733 + RR42_RS29200 0.21 +0.7
1,907,734 - RR42_RS29200 0.21 -0.0
1,907,734 - RR42_RS29200 0.21 -0.3
1,907,734 - RR42_RS29200 0.21 -1.6
1,907,734 - RR42_RS29200 0.21 -0.5
1,907,766 + RR42_RS29200 0.27 -0.0
1,907,767 - RR42_RS29200 0.28 -1.1
1,907,899 - RR42_RS29200 0.52 -1.7
1,907,899 - RR42_RS29200 0.52 -0.8
1,907,918 + RR42_RS29200 0.56 +0.1
1,907,954 + RR42_RS29200 0.62 +0.3
1,908,101 + RR42_RS29200 0.89 -0.3
1,908,112 - -0.4
1,908,113 + +0.4
1,908,113 + +0.1
1,908,114 - -0.7
1,908,114 - -1.5
1,908,293 + RR42_RS29205 0.11 -0.3
1,908,372 - RR42_RS29205 0.18 +0.8
1,908,372 - RR42_RS29205 0.18 -0.8
1,908,626 + RR42_RS29205 0.38 +0.1
1,908,626 + RR42_RS29205 0.38 -0.8
1,908,627 - -0.3
1,908,627 - RR42_RS29205 0.38 -0.7
1,908,697 - RR42_RS29205 0.44 +0.5
1,908,731 + RR42_RS29205 0.47 -1.6
1,908,732 - RR42_RS29205 0.47 -0.3
1,909,037 + RR42_RS29205 0.71 -0.8

Or see this region's nucleotide sequence