Experiment: Azelaic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS27200 and RR42_RS27205 are separated by 110 nucleotides RR42_RS27205 and RR42_RS27210 overlap by 4 nucleotides RR42_RS27210 and RR42_RS27215 are separated by 93 nucleotides
RR42_RS27200: RR42_RS27200 - LacI family transcriptional regulator, at 1,454,667 to 1,455,638
_RS27200
RR42_RS27205: RR42_RS27205 - GlcNAc-PI de-N-acetylase, at 1,455,749 to 1,456,498
_RS27205
RR42_RS27210: RR42_RS27210 - hypothetical protein, at 1,456,495 to 1,457,208
_RS27210
RR42_RS27215: RR42_RS27215 - LysR family transcriptional regulator, at 1,457,302 to 1,458,252
_RS27215
Position (kb) 1455
1456
1457 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1454.778 kb on + strand, within RR42_RS27200 at 1454.778 kb on + strand, within RR42_RS27200 at 1454.779 kb on - strand, within RR42_RS27200 at 1454.928 kb on + strand, within RR42_RS27200 at 1454.929 kb on - strand, within RR42_RS27200 at 1455.129 kb on + strand, within RR42_RS27200 at 1455.129 kb on + strand, within RR42_RS27200 at 1455.129 kb on + strand, within RR42_RS27200 at 1455.216 kb on + strand, within RR42_RS27200 at 1455.217 kb on - strand, within RR42_RS27200 at 1455.217 kb on - strand, within RR42_RS27200 at 1455.217 kb on - strand, within RR42_RS27200 at 1455.217 kb on - strand, within RR42_RS27200 at 1455.260 kb on + strand, within RR42_RS27200 at 1455.260 kb on + strand, within RR42_RS27200 at 1455.261 kb on - strand, within RR42_RS27200 at 1455.261 kb on - strand, within RR42_RS27200 at 1455.664 kb on - strand at 1455.673 kb on + strand at 1455.860 kb on + strand, within RR42_RS27205 at 1455.875 kb on + strand, within RR42_RS27205 at 1456.043 kb on + strand, within RR42_RS27205 at 1456.043 kb on + strand, within RR42_RS27205 at 1456.092 kb on - strand, within RR42_RS27205 at 1456.142 kb on + strand, within RR42_RS27205 at 1456.143 kb on - strand, within RR42_RS27205 at 1456.143 kb on - strand, within RR42_RS27205 at 1456.143 kb on - strand, within RR42_RS27205 at 1456.143 kb on - strand, within RR42_RS27205 at 1456.212 kb on - strand, within RR42_RS27205 at 1456.309 kb on + strand, within RR42_RS27205 at 1456.310 kb on - strand, within RR42_RS27205 at 1456.379 kb on + strand, within RR42_RS27205 at 1456.382 kb on + strand, within RR42_RS27205 at 1456.382 kb on + strand, within RR42_RS27205 at 1456.446 kb on - strand at 1456.457 kb on + strand at 1456.457 kb on + strand at 1456.458 kb on - strand at 1456.616 kb on - strand, within RR42_RS27210 at 1457.122 kb on + strand, within RR42_RS27210 at 1457.123 kb on - strand, within RR42_RS27210 at 1457.123 kb on - strand, within RR42_RS27210 at 1457.242 kb on - strand at 1457.309 kb on + strand at 1457.379 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Azelaic (C) remove 1,454,778 + RR42_RS27200 0.11 -1.4 1,454,778 + RR42_RS27200 0.11 -0.8 1,454,779 - RR42_RS27200 0.12 -2.4 1,454,928 + RR42_RS27200 0.27 -0.2 1,454,929 - RR42_RS27200 0.27 +0.9 1,455,129 + RR42_RS27200 0.48 -0.1 1,455,129 + RR42_RS27200 0.48 +1.4 1,455,129 + RR42_RS27200 0.48 -1.6 1,455,216 + RR42_RS27200 0.56 +0.4 1,455,217 - RR42_RS27200 0.57 +1.4 1,455,217 - RR42_RS27200 0.57 +0.2 1,455,217 - RR42_RS27200 0.57 +1.2 1,455,217 - RR42_RS27200 0.57 -0.4 1,455,260 + RR42_RS27200 0.61 +0.0 1,455,260 + RR42_RS27200 0.61 +1.8 1,455,261 - RR42_RS27200 0.61 +0.5 1,455,261 - RR42_RS27200 0.61 +0.4 1,455,664 - -0.1 1,455,673 + -0.6 1,455,860 + RR42_RS27205 0.15 -0.1 1,455,875 + RR42_RS27205 0.17 +2.4 1,456,043 + RR42_RS27205 0.39 -0.8 1,456,043 + RR42_RS27205 0.39 -0.3 1,456,092 - RR42_RS27205 0.46 -1.4 1,456,142 + RR42_RS27205 0.52 -1.4 1,456,143 - RR42_RS27205 0.53 +0.6 1,456,143 - RR42_RS27205 0.53 -2.8 1,456,143 - RR42_RS27205 0.53 -0.0 1,456,143 - RR42_RS27205 0.53 +1.0 1,456,212 - RR42_RS27205 0.62 -0.4 1,456,309 + RR42_RS27205 0.75 -2.5 1,456,310 - RR42_RS27205 0.75 -0.9 1,456,379 + RR42_RS27205 0.84 -0.5 1,456,382 + RR42_RS27205 0.84 +2.4 1,456,382 + RR42_RS27205 0.84 +0.9 1,456,446 - +0.6 1,456,457 + -0.5 1,456,457 + -0.2 1,456,458 - -0.6 1,456,616 - RR42_RS27210 0.17 +2.0 1,457,122 + RR42_RS27210 0.88 -1.4 1,457,123 - RR42_RS27210 0.88 +0.4 1,457,123 - RR42_RS27210 0.88 +0.8 1,457,242 - -0.2 1,457,309 + -0.6 1,457,379 + +0.7
Or see this region's nucleotide sequence