Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24435

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24430 and RR42_RS24435 are separated by 23 nucleotidesRR42_RS24435 and RR42_RS24440 are separated by 130 nucleotides RR42_RS24430: RR42_RS24430 - biphenyl 2,3-dioxygenase, at 814,390 to 814,965 _RS24430 RR42_RS24435: RR42_RS24435 - FAD-monooxygenase, at 814,989 to 816,626 _RS24435 RR42_RS24440: RR42_RS24440 - hypothetical protein, at 816,757 to 818,061 _RS24440 Position (kb) 814 815 816 817Strain fitness (log2 ratio) -2 -1 0 1 2 3at 813.993 kb on + strandat 813.994 kb on - strandat 814.033 kb on - strandat 814.079 kb on + strandat 814.080 kb on - strandat 814.080 kb on - strandat 814.082 kb on + strandat 814.083 kb on - strandat 814.141 kb on + strandat 814.164 kb on - strandat 814.164 kb on - strandat 814.231 kb on + strandat 814.232 kb on - strandat 814.319 kb on + strandat 814.320 kb on - strandat 814.320 kb on - strandat 814.320 kb on - strandat 814.335 kb on + strandat 814.336 kb on - strandat 814.339 kb on + strandat 814.339 kb on + strandat 814.339 kb on + strandat 814.340 kb on - strandat 814.378 kb on + strandat 814.379 kb on - strandat 814.457 kb on - strand, within RR42_RS24430at 814.474 kb on + strand, within RR42_RS24430at 814.477 kb on + strand, within RR42_RS24430at 814.478 kb on - strand, within RR42_RS24430at 814.478 kb on - strand, within RR42_RS24430at 814.478 kb on - strand, within RR42_RS24430at 814.478 kb on - strand, within RR42_RS24430at 814.491 kb on - strand, within RR42_RS24430at 814.491 kb on - strand, within RR42_RS24430at 814.537 kb on + strand, within RR42_RS24430at 814.537 kb on + strand, within RR42_RS24430at 814.537 kb on + strand, within RR42_RS24430at 814.538 kb on - strand, within RR42_RS24430at 814.565 kb on + strand, within RR42_RS24430at 814.660 kb on - strand, within RR42_RS24430at 814.663 kb on + strand, within RR42_RS24430at 814.663 kb on + strand, within RR42_RS24430at 814.664 kb on - strand, within RR42_RS24430at 814.664 kb on - strand, within RR42_RS24430at 814.704 kb on + strand, within RR42_RS24430at 814.705 kb on - strand, within RR42_RS24430at 814.705 kb on - strand, within RR42_RS24430at 814.705 kb on - strand, within RR42_RS24430at 814.705 kb on - strand, within RR42_RS24430at 814.732 kb on + strand, within RR42_RS24430at 814.733 kb on - strand, within RR42_RS24430at 814.733 kb on - strand, within RR42_RS24430at 814.814 kb on - strand, within RR42_RS24430at 815.100 kb on - strandat 815.152 kb on - strandat 815.232 kb on - strand, within RR42_RS24435at 815.512 kb on - strand, within RR42_RS24435at 815.512 kb on - strand, within RR42_RS24435at 815.512 kb on - strand, within RR42_RS24435at 815.540 kb on + strand, within RR42_RS24435at 815.541 kb on - strand, within RR42_RS24435at 815.541 kb on - strand, within RR42_RS24435at 815.541 kb on - strand, within RR42_RS24435at 815.660 kb on + strand, within RR42_RS24435at 815.683 kb on + strand, within RR42_RS24435at 815.705 kb on + strand, within RR42_RS24435at 815.706 kb on - strand, within RR42_RS24435at 815.706 kb on - strand, within RR42_RS24435at 815.706 kb on - strand, within RR42_RS24435at 815.770 kb on + strand, within RR42_RS24435at 815.771 kb on - strand, within RR42_RS24435at 815.852 kb on + strand, within RR42_RS24435at 815.853 kb on - strand, within RR42_RS24435at 815.853 kb on - strand, within RR42_RS24435at 815.853 kb on - strand, within RR42_RS24435at 815.853 kb on - strand, within RR42_RS24435at 815.919 kb on + strand, within RR42_RS24435at 816.015 kb on + strand, within RR42_RS24435at 816.015 kb on + strand, within RR42_RS24435at 816.015 kb on + strand, within RR42_RS24435at 816.015 kb on + strand, within RR42_RS24435at 816.016 kb on - strand, within RR42_RS24435at 816.016 kb on - strand, within RR42_RS24435at 816.102 kb on + strand, within RR42_RS24435at 816.102 kb on + strand, within RR42_RS24435at 816.102 kb on + strand, within RR42_RS24435at 816.102 kb on + strand, within RR42_RS24435at 816.103 kb on - strand, within RR42_RS24435at 816.103 kb on - strand, within RR42_RS24435at 816.103 kb on - strand, within RR42_RS24435at 816.231 kb on + strand, within RR42_RS24435at 816.231 kb on + strand, within RR42_RS24435at 816.232 kb on - strand, within RR42_RS24435at 816.291 kb on + strand, within RR42_RS24435at 816.291 kb on + strand, within RR42_RS24435at 816.291 kb on + strand, within RR42_RS24435at 816.291 kb on + strand, within RR42_RS24435at 816.292 kb on - strand, within RR42_RS24435at 816.292 kb on - strand, within RR42_RS24435at 816.357 kb on + strand, within RR42_RS24435at 816.357 kb on + strand, within RR42_RS24435at 816.358 kb on - strand, within RR42_RS24435at 816.358 kb on - strand, within RR42_RS24435at 816.440 kb on - strand, within RR42_RS24435at 816.492 kb on + strandat 816.493 kb on - strandat 816.493 kb on - strandat 816.582 kb on + strandat 816.582 kb on + strandat 816.583 kb on - strandat 816.654 kb on - strandat 816.654 kb on - strandat 816.654 kb on - strandat 816.672 kb on + strandat 816.673 kb on - strandat 816.673 kb on - strandat 816.738 kb on - strandat 816.779 kb on + strandat 816.780 kb on - strandat 816.780 kb on - strandat 816.780 kb on - strandat 816.780 kb on - strandat 816.780 kb on - strandat 816.887 kb on + strandat 816.910 kb on + strand, within RR42_RS24440at 817.006 kb on + strand, within RR42_RS24440at 817.179 kb on + strand, within RR42_RS24440at 817.362 kb on + strand, within RR42_RS24440at 817.363 kb on - strand, within RR42_RS24440at 817.393 kb on + strand, within RR42_RS24440at 817.408 kb on - strand, within RR42_RS24440at 817.418 kb on + strand, within RR42_RS24440at 817.442 kb on + strand, within RR42_RS24440at 817.442 kb on + strand, within RR42_RS24440at 817.442 kb on + strand, within RR42_RS24440at 817.443 kb on - strand, within RR42_RS24440at 817.447 kb on - strand, within RR42_RS24440

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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813,993 + -0.5
813,994 - -0.9
814,033 - -0.1
814,079 + -0.5
814,080 - -0.6
814,080 - -0.4
814,082 + +0.1
814,083 - +0.6
814,141 + -0.4
814,164 - -1.1
814,164 - -0.1
814,231 + -0.2
814,232 - +0.1
814,319 + -0.6
814,320 - +0.1
814,320 - +0.3
814,320 - +0.1
814,335 + +2.4
814,336 - -0.2
814,339 + -0.8
814,339 + +1.2
814,339 + -1.7
814,340 - -0.5
814,378 + +0.2
814,379 - +1.4
814,457 - RR42_RS24430 0.12 +0.4
814,474 + RR42_RS24430 0.15 -1.4
814,477 + RR42_RS24430 0.15 +1.2
814,478 - RR42_RS24430 0.15 +0.6
814,478 - RR42_RS24430 0.15 -0.6
814,478 - RR42_RS24430 0.15 +0.6
814,478 - RR42_RS24430 0.15 +0.9
814,491 - RR42_RS24430 0.18 +0.7
814,491 - RR42_RS24430 0.18 -0.7
814,537 + RR42_RS24430 0.26 -0.9
814,537 + RR42_RS24430 0.26 +0.2
814,537 + RR42_RS24430 0.26 -0.3
814,538 - RR42_RS24430 0.26 -0.5
814,565 + RR42_RS24430 0.30 +3.2
814,660 - RR42_RS24430 0.47 +0.2
814,663 + RR42_RS24430 0.47 +0.3
814,663 + RR42_RS24430 0.47 -0.1
814,664 - RR42_RS24430 0.48 +0.1
814,664 - RR42_RS24430 0.48 +0.3
814,704 + RR42_RS24430 0.55 -0.1
814,705 - RR42_RS24430 0.55 -0.1
814,705 - RR42_RS24430 0.55 +0.4
814,705 - RR42_RS24430 0.55 -0.6
814,705 - RR42_RS24430 0.55 +0.3
814,732 + RR42_RS24430 0.59 +1.2
814,733 - RR42_RS24430 0.60 -1.2
814,733 - RR42_RS24430 0.60 -0.2
814,814 - RR42_RS24430 0.74 +0.8
815,100 - -0.7
815,152 - +0.9
815,232 - RR42_RS24435 0.15 +0.2
815,512 - RR42_RS24435 0.32 -0.3
815,512 - RR42_RS24435 0.32 -0.8
815,512 - RR42_RS24435 0.32 -0.8
815,540 + RR42_RS24435 0.34 -0.3
815,541 - RR42_RS24435 0.34 +0.3
815,541 - RR42_RS24435 0.34 +0.4
815,541 - RR42_RS24435 0.34 +0.1
815,660 + RR42_RS24435 0.41 +0.9
815,683 + RR42_RS24435 0.42 -1.2
815,705 + RR42_RS24435 0.44 -1.0
815,706 - RR42_RS24435 0.44 -0.8
815,706 - RR42_RS24435 0.44 -0.8
815,706 - RR42_RS24435 0.44 -0.3
815,770 + RR42_RS24435 0.48 +1.6
815,771 - RR42_RS24435 0.48 +0.8
815,852 + RR42_RS24435 0.53 -1.2
815,853 - RR42_RS24435 0.53 -0.2
815,853 - RR42_RS24435 0.53 +0.0
815,853 - RR42_RS24435 0.53 +3.2
815,853 - RR42_RS24435 0.53 -1.5
815,919 + RR42_RS24435 0.57 +1.4
816,015 + RR42_RS24435 0.63 +1.8
816,015 + RR42_RS24435 0.63 +0.7
816,015 + RR42_RS24435 0.63 +0.5
816,015 + RR42_RS24435 0.63 -1.4
816,016 - RR42_RS24435 0.63 +0.3
816,016 - RR42_RS24435 0.63 +0.4
816,102 + RR42_RS24435 0.68 +1.6
816,102 + RR42_RS24435 0.68 -0.1
816,102 + RR42_RS24435 0.68 +0.8
816,102 + RR42_RS24435 0.68 +0.4
816,103 - RR42_RS24435 0.68 +1.8
816,103 - RR42_RS24435 0.68 +0.5
816,103 - RR42_RS24435 0.68 +0.2
816,231 + RR42_RS24435 0.76 +0.5
816,231 + RR42_RS24435 0.76 -0.7
816,232 - RR42_RS24435 0.76 +2.2
816,291 + RR42_RS24435 0.79 +0.5
816,291 + RR42_RS24435 0.79 -0.3
816,291 + RR42_RS24435 0.79 +0.5
816,291 + RR42_RS24435 0.79 +0.7
816,292 - RR42_RS24435 0.80 -0.7
816,292 - RR42_RS24435 0.80 +0.4
816,357 + RR42_RS24435 0.84 +0.6
816,357 + RR42_RS24435 0.84 +3.2
816,358 - RR42_RS24435 0.84 -0.7
816,358 - RR42_RS24435 0.84 -0.8
816,440 - RR42_RS24435 0.89 +0.1
816,492 + +0.5
816,493 - +0.1
816,493 - -1.4
816,582 + -0.5
816,582 + +0.2
816,583 - -0.4
816,654 - +0.5
816,654 - +0.1
816,654 - -0.4
816,672 + -0.9
816,673 - -0.6
816,673 - +0.5
816,738 - -0.4
816,779 + -0.1
816,780 - -0.7
816,780 - -0.1
816,780 - -0.2
816,780 - +0.5
816,780 - +0.2
816,887 + +0.5
816,910 + RR42_RS24440 0.12 +1.8
817,006 + RR42_RS24440 0.19 -0.0
817,179 + RR42_RS24440 0.32 +0.2
817,362 + RR42_RS24440 0.46 +0.4
817,363 - RR42_RS24440 0.46 +0.7
817,393 + RR42_RS24440 0.49 -0.9
817,408 - RR42_RS24440 0.50 -0.8
817,418 + RR42_RS24440 0.51 -0.7
817,442 + RR42_RS24440 0.52 +0.5
817,442 + RR42_RS24440 0.52 +0.3
817,442 + RR42_RS24440 0.52 -2.3
817,443 - RR42_RS24440 0.53 -0.4
817,447 - RR42_RS24440 0.53 -0.8

Or see this region's nucleotide sequence