Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23665

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23660 and RR42_RS23665 are separated by 955 nucleotidesRR42_RS23665 and RR42_RS23670 are separated by 372 nucleotides RR42_RS23660: RR42_RS23660 - hypothetical protein, at 633,663 to 633,986 _RS23660 RR42_RS23665: RR42_RS23665 - histidine kinase, at 634,942 to 637,023 _RS23665 RR42_RS23670: RR42_RS23670 - DSBA oxidoreductase, at 637,396 to 638,883 _RS23670 Position (kb) 634 635 636 637 638Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 633.973 kb on - strandat 634.250 kb on + strandat 634.250 kb on + strandat 634.250 kb on + strandat 634.250 kb on + strandat 634.251 kb on - strandat 634.251 kb on - strandat 634.251 kb on - strandat 634.267 kb on + strandat 634.526 kb on - strandat 634.616 kb on - strandat 634.722 kb on + strandat 634.722 kb on + strandat 634.722 kb on + strandat 634.722 kb on + strandat 634.722 kb on + strandat 634.722 kb on + strandat 634.722 kb on + strandat 634.723 kb on - strandat 634.723 kb on - strandat 634.775 kb on + strandat 634.776 kb on - strandat 634.777 kb on + strandat 634.777 kb on + strandat 634.778 kb on - strandat 634.778 kb on - strandat 634.778 kb on - strandat 634.778 kb on - strandat 634.778 kb on - strandat 634.778 kb on - strandat 634.827 kb on + strandat 634.827 kb on + strandat 634.859 kb on - strandat 634.920 kb on - strandat 634.925 kb on + strandat 634.925 kb on + strandat 634.925 kb on + strandat 634.926 kb on - strandat 634.986 kb on - strandat 635.296 kb on + strand, within RR42_RS23665at 635.297 kb on - strand, within RR42_RS23665at 635.326 kb on + strand, within RR42_RS23665at 635.326 kb on + strand, within RR42_RS23665at 635.326 kb on + strand, within RR42_RS23665at 635.327 kb on - strand, within RR42_RS23665at 635.429 kb on - strand, within RR42_RS23665at 635.429 kb on - strand, within RR42_RS23665at 635.429 kb on - strand, within RR42_RS23665at 635.506 kb on + strand, within RR42_RS23665at 635.506 kb on + strand, within RR42_RS23665at 635.506 kb on + strand, within RR42_RS23665at 635.506 kb on + strand, within RR42_RS23665at 635.506 kb on + strand, within RR42_RS23665at 635.507 kb on - strand, within RR42_RS23665at 635.507 kb on - strand, within RR42_RS23665at 635.507 kb on - strand, within RR42_RS23665at 635.656 kb on + strand, within RR42_RS23665at 635.656 kb on + strand, within RR42_RS23665at 635.656 kb on + strand, within RR42_RS23665at 635.656 kb on + strand, within RR42_RS23665at 635.656 kb on + strand, within RR42_RS23665at 635.656 kb on + strand, within RR42_RS23665at 635.656 kb on + strand, within RR42_RS23665at 635.656 kb on + strand, within RR42_RS23665at 635.657 kb on - strand, within RR42_RS23665at 635.657 kb on - strand, within RR42_RS23665at 635.657 kb on - strand, within RR42_RS23665at 635.657 kb on - strandat 635.657 kb on - strand, within RR42_RS23665at 635.657 kb on - strand, within RR42_RS23665at 635.657 kb on - strand, within RR42_RS23665at 635.657 kb on - strand, within RR42_RS23665at 635.657 kb on - strand, within RR42_RS23665at 635.657 kb on - strand, within RR42_RS23665at 635.805 kb on + strand, within RR42_RS23665at 636.000 kb on + strand, within RR42_RS23665at 636.000 kb on + strand, within RR42_RS23665at 636.000 kb on + strand, within RR42_RS23665at 636.001 kb on - strand, within RR42_RS23665at 636.069 kb on + strand, within RR42_RS23665at 636.070 kb on - strand, within RR42_RS23665at 636.564 kb on - strand, within RR42_RS23665at 636.794 kb on + strand, within RR42_RS23665at 637.021 kb on + strandat 637.021 kb on + strandat 637.021 kb on + strandat 637.021 kb on + strandat 637.021 kb on + strandat 637.021 kb on + strandat 637.022 kb on - strandat 637.022 kb on - strandat 637.113 kb on + strandat 637.113 kb on + strandat 637.114 kb on - strandat 637.114 kb on - strandat 637.119 kb on + strandat 637.119 kb on + strandat 637.119 kb on + strandat 637.120 kb on - strandat 637.120 kb on - strandat 637.124 kb on + strandat 637.124 kb on + strandat 637.135 kb on + strandat 637.136 kb on - strandat 637.136 kb on - strandat 637.138 kb on - strandat 637.528 kb on + strandat 637.529 kb on - strandat 637.529 kb on - strandat 637.529 kb on - strandat 637.561 kb on + strand, within RR42_RS23670at 637.780 kb on + strand, within RR42_RS23670at 637.780 kb on + strand, within RR42_RS23670at 637.781 kb on - strand, within RR42_RS23670at 637.781 kb on - strand, within RR42_RS23670at 637.781 kb on - strand, within RR42_RS23670at 637.781 kb on - strand, within RR42_RS23670at 637.781 kb on - strand, within RR42_RS23670at 637.793 kb on + strand, within RR42_RS23670at 637.846 kb on + strand, within RR42_RS23670at 637.846 kb on + strand, within RR42_RS23670at 637.846 kb on + strand, within RR42_RS23670at 637.847 kb on - strand, within RR42_RS23670at 637.847 kb on - strand, within RR42_RS23670at 637.963 kb on + strand, within RR42_RS23670at 637.963 kb on + strand, within RR42_RS23670at 637.963 kb on + strand, within RR42_RS23670at 637.963 kb on + strand, within RR42_RS23670at 637.964 kb on - strand, within RR42_RS23670at 637.964 kb on - strand, within RR42_RS23670

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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633,973 - +3.1
634,250 + +1.0
634,250 + -0.4
634,250 + +0.5
634,250 + -0.7
634,251 - -0.8
634,251 - +0.1
634,251 - -1.2
634,267 + -0.1
634,526 - -0.0
634,616 - +0.2
634,722 + -1.5
634,722 + +0.2
634,722 + -0.4
634,722 + +0.1
634,722 + -0.8
634,722 + +0.1
634,722 + +1.3
634,723 - +0.7
634,723 - +0.2
634,775 + -0.0
634,776 - -0.6
634,777 + -0.6
634,777 + -0.6
634,778 - -0.6
634,778 - -0.1
634,778 - +0.0
634,778 - +0.2
634,778 - +0.2
634,778 - +1.3
634,827 + -0.4
634,827 + -1.8
634,859 - +1.7
634,920 - -0.8
634,925 + -0.9
634,925 + -0.8
634,925 + +0.9
634,926 - -0.0
634,986 - -1.1
635,296 + RR42_RS23665 0.17 -1.4
635,297 - RR42_RS23665 0.17 -0.8
635,326 + RR42_RS23665 0.18 -1.4
635,326 + RR42_RS23665 0.18 -1.7
635,326 + RR42_RS23665 0.18 +0.8
635,327 - RR42_RS23665 0.18 -0.1
635,429 - RR42_RS23665 0.23 +1.0
635,429 - RR42_RS23665 0.23 -0.6
635,429 - RR42_RS23665 0.23 +0.9
635,506 + RR42_RS23665 0.27 -0.3
635,506 + RR42_RS23665 0.27 -0.1
635,506 + RR42_RS23665 0.27 -0.6
635,506 + RR42_RS23665 0.27 -0.2
635,506 + RR42_RS23665 0.27 -0.6
635,507 - RR42_RS23665 0.27 -0.5
635,507 - RR42_RS23665 0.27 -0.1
635,507 - RR42_RS23665 0.27 -1.4
635,656 + RR42_RS23665 0.34 -0.3
635,656 + RR42_RS23665 0.34 +0.1
635,656 + RR42_RS23665 0.34 -0.1
635,656 + RR42_RS23665 0.34 -0.7
635,656 + RR42_RS23665 0.34 +0.2
635,656 + RR42_RS23665 0.34 -2.8
635,656 + RR42_RS23665 0.34 +0.1
635,656 + RR42_RS23665 0.34 +0.9
635,657 - RR42_RS23665 0.34 -0.7
635,657 - RR42_RS23665 0.34 +0.7
635,657 - RR42_RS23665 0.34 -0.7
635,657 - -0.9
635,657 - RR42_RS23665 0.34 +0.0
635,657 - RR42_RS23665 0.34 +0.7
635,657 - RR42_RS23665 0.34 +1.7
635,657 - RR42_RS23665 0.34 +0.2
635,657 - RR42_RS23665 0.34 -0.1
635,657 - RR42_RS23665 0.34 -1.1
635,805 + RR42_RS23665 0.41 +0.9
636,000 + RR42_RS23665 0.51 -1.1
636,000 + RR42_RS23665 0.51 -0.7
636,000 + RR42_RS23665 0.51 -0.3
636,001 - RR42_RS23665 0.51 +0.3
636,069 + RR42_RS23665 0.54 +0.2
636,070 - RR42_RS23665 0.54 -1.8
636,564 - RR42_RS23665 0.78 -1.3
636,794 + RR42_RS23665 0.89 +0.0
637,021 + +1.0
637,021 + +0.2
637,021 + -0.1
637,021 + +0.2
637,021 + +0.8
637,021 + +4.0
637,022 - -0.4
637,022 - -0.4
637,113 + -0.1
637,113 + -0.8
637,114 - +0.1
637,114 - -0.9
637,119 + +0.7
637,119 + -0.0
637,119 + +0.4
637,120 - +1.1
637,120 - +0.3
637,124 + +0.2
637,124 + +1.7
637,135 + +0.5
637,136 - -0.6
637,136 - -0.5
637,138 - +0.4
637,528 + +0.1
637,529 - +0.2
637,529 - -0.5
637,529 - -0.5
637,561 + RR42_RS23670 0.11 +0.1
637,780 + RR42_RS23670 0.26 -0.3
637,780 + RR42_RS23670 0.26 +0.8
637,781 - RR42_RS23670 0.26 +0.4
637,781 - RR42_RS23670 0.26 -1.8
637,781 - RR42_RS23670 0.26 -2.0
637,781 - RR42_RS23670 0.26 -0.9
637,781 - RR42_RS23670 0.26 -0.1
637,793 + RR42_RS23670 0.27 +0.5
637,846 + RR42_RS23670 0.30 -0.7
637,846 + RR42_RS23670 0.30 -0.5
637,846 + RR42_RS23670 0.30 +0.4
637,847 - RR42_RS23670 0.30 -0.7
637,847 - RR42_RS23670 0.30 +0.7
637,963 + RR42_RS23670 0.38 +1.1
637,963 + RR42_RS23670 0.38 -1.7
637,963 + RR42_RS23670 0.38 -0.2
637,963 + RR42_RS23670 0.38 -0.3
637,964 - RR42_RS23670 0.38 +0.0
637,964 - RR42_RS23670 0.38 -0.2

Or see this region's nucleotide sequence