Experiment: Azelaic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23655 and RR42_RS23660 are separated by 214 nucleotides RR42_RS23660 and RR42_RS23665 are separated by 955 nucleotides
RR42_RS23655: RR42_RS23655 - flagellin, at 632,120 to 633,448
_RS23655
RR42_RS23660: RR42_RS23660 - hypothetical protein, at 633,663 to 633,986
_RS23660
RR42_RS23665: RR42_RS23665 - histidine kinase, at 634,942 to 637,023
_RS23665
Position (kb) 633
634 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 632.706 kb on + strand, within RR42_RS23655 at 632.706 kb on + strand, within RR42_RS23655 at 632.706 kb on + strand, within RR42_RS23655 at 632.706 kb on + strand, within RR42_RS23655 at 632.706 kb on + strand, within RR42_RS23655 at 632.707 kb on - strand, within RR42_RS23655 at 632.707 kb on - strand, within RR42_RS23655 at 632.707 kb on - strand, within RR42_RS23655 at 632.707 kb on - strand, within RR42_RS23655 at 632.733 kb on + strand, within RR42_RS23655 at 632.733 kb on + strand, within RR42_RS23655 at 632.733 kb on + strand, within RR42_RS23655 at 632.733 kb on + strand, within RR42_RS23655 at 632.733 kb on + strand, within RR42_RS23655 at 632.733 kb on + strand, within RR42_RS23655 at 632.734 kb on - strand, within RR42_RS23655 at 633.175 kb on + strand at 633.175 kb on + strand, within RR42_RS23655 at 633.175 kb on + strand, within RR42_RS23655 at 633.338 kb on - strand at 633.430 kb on + strand at 633.431 kb on - strand at 633.431 kb on - strand at 633.431 kb on - strand at 633.431 kb on - strand at 633.451 kb on + strand at 633.451 kb on + strand at 633.451 kb on + strand at 633.452 kb on - strand at 633.460 kb on + strand at 633.461 kb on - strand at 633.461 kb on - strand at 633.467 kb on + strand at 633.468 kb on - strand at 633.472 kb on + strand at 633.472 kb on + strand at 633.551 kb on - strand at 633.574 kb on + strand at 633.689 kb on + strand at 633.689 kb on + strand at 633.690 kb on - strand at 633.690 kb on - strand at 633.691 kb on + strand at 633.691 kb on + strand at 633.691 kb on + strand at 633.691 kb on + strand at 633.692 kb on - strand at 633.692 kb on - strand at 633.692 kb on - strand at 633.693 kb on + strand at 633.693 kb on + strand at 633.693 kb on + strand at 633.693 kb on + strand at 633.693 kb on + strand at 633.693 kb on + strand at 633.693 kb on + strand at 633.694 kb on - strand at 633.694 kb on - strand at 633.694 kb on - strand at 633.694 kb on - strand at 633.694 kb on - strand at 633.694 kb on - strand at 633.787 kb on + strand, within RR42_RS23660 at 633.788 kb on - strand, within RR42_RS23660 at 633.835 kb on + strand, within RR42_RS23660 at 633.836 kb on + strand, within RR42_RS23660 at 633.836 kb on + strand, within RR42_RS23660 at 633.837 kb on - strand, within RR42_RS23660 at 633.837 kb on - strand, within RR42_RS23660 at 633.837 kb on - strand, within RR42_RS23660 at 633.838 kb on + strand, within RR42_RS23660 at 633.838 kb on + strand, within RR42_RS23660 at 633.838 kb on + strand, within RR42_RS23660 at 633.838 kb on + strand, within RR42_RS23660 at 633.838 kb on + strand, within RR42_RS23660 at 633.838 kb on + strand, within RR42_RS23660 at 633.838 kb on + strand, within RR42_RS23660 at 633.838 kb on + strand, within RR42_RS23660 at 633.838 kb on + strand, within RR42_RS23660 at 633.838 kb on + strand, within RR42_RS23660 at 633.838 kb on + strand, within RR42_RS23660 at 633.838 kb on + strand, within RR42_RS23660 at 633.839 kb on - strand, within RR42_RS23660 at 633.839 kb on - strand, within RR42_RS23660 at 633.839 kb on - strand, within RR42_RS23660 at 633.839 kb on - strand, within RR42_RS23660 at 633.839 kb on - strand, within RR42_RS23660 at 633.886 kb on - strand, within RR42_RS23660 at 633.973 kb on - strand at 634.250 kb on + strand at 634.250 kb on + strand at 634.250 kb on + strand at 634.250 kb on + strand at 634.251 kb on - strand at 634.251 kb on - strand at 634.251 kb on - strand at 634.267 kb on + strand at 634.526 kb on - strand at 634.616 kb on - strand at 634.722 kb on + strand at 634.722 kb on + strand at 634.722 kb on + strand at 634.722 kb on + strand at 634.722 kb on + strand at 634.722 kb on + strand at 634.722 kb on + strand at 634.723 kb on - strand at 634.723 kb on - strand at 634.775 kb on + strand at 634.776 kb on - strand at 634.777 kb on + strand at 634.777 kb on + strand at 634.778 kb on - strand at 634.778 kb on - strand at 634.778 kb on - strand at 634.778 kb on - strand at 634.778 kb on - strand at 634.778 kb on - strand at 634.827 kb on + strand at 634.827 kb on + strand at 634.859 kb on - strand at 634.920 kb on - strand at 634.925 kb on + strand at 634.925 kb on + strand at 634.925 kb on + strand at 634.926 kb on - strand at 634.986 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Azelaic (C) remove 632,706 + RR42_RS23655 0.44 +0.8 632,706 + RR42_RS23655 0.44 +3.2 632,706 + RR42_RS23655 0.44 -0.2 632,706 + RR42_RS23655 0.44 +1.4 632,706 + RR42_RS23655 0.44 +1.1 632,707 - RR42_RS23655 0.44 +0.5 632,707 - RR42_RS23655 0.44 +0.7 632,707 - RR42_RS23655 0.44 +0.6 632,707 - RR42_RS23655 0.44 -0.5 632,733 + RR42_RS23655 0.46 +0.3 632,733 + RR42_RS23655 0.46 -0.1 632,733 + RR42_RS23655 0.46 +0.9 632,733 + RR42_RS23655 0.46 -2.1 632,733 + RR42_RS23655 0.46 +1.6 632,733 + RR42_RS23655 0.46 +0.5 632,734 - RR42_RS23655 0.46 -0.1 633,175 + -0.3 633,175 + RR42_RS23655 0.79 -1.9 633,175 + RR42_RS23655 0.79 +2.1 633,338 - +0.0 633,430 + -0.8 633,431 - -0.7 633,431 - -0.6 633,431 - +0.2 633,431 - +1.8 633,451 + -0.9 633,451 + -0.5 633,451 + -3.0 633,452 - +0.1 633,460 + +0.4 633,461 - +0.2 633,461 - -0.3 633,467 + -0.3 633,468 - +1.7 633,472 + -0.4 633,472 + +0.1 633,551 - -1.7 633,574 + +1.0 633,689 + +0.3 633,689 + +0.7 633,690 - +0.7 633,690 - -1.8 633,691 + +0.0 633,691 + -0.9 633,691 + -0.2 633,691 + -1.7 633,692 - -0.5 633,692 - -0.3 633,692 - -1.0 633,693 + +0.3 633,693 + +0.9 633,693 + +0.1 633,693 + +1.1 633,693 + +0.3 633,693 + +1.7 633,693 + +0.2 633,694 - -0.6 633,694 - -0.2 633,694 - +1.1 633,694 - -0.2 633,694 - -1.0 633,694 - -0.2 633,787 + RR42_RS23660 0.38 +0.8 633,788 - RR42_RS23660 0.39 -0.9 633,835 + RR42_RS23660 0.53 +1.7 633,836 + RR42_RS23660 0.53 -1.2 633,836 + RR42_RS23660 0.53 -0.3 633,837 - RR42_RS23660 0.54 -0.8 633,837 - RR42_RS23660 0.54 -0.7 633,837 - RR42_RS23660 0.54 -0.7 633,838 + RR42_RS23660 0.54 -1.7 633,838 + RR42_RS23660 0.54 +2.7 633,838 + RR42_RS23660 0.54 -0.3 633,838 + RR42_RS23660 0.54 +0.3 633,838 + RR42_RS23660 0.54 -0.1 633,838 + RR42_RS23660 0.54 -1.0 633,838 + RR42_RS23660 0.54 -0.1 633,838 + RR42_RS23660 0.54 -1.2 633,838 + RR42_RS23660 0.54 -0.1 633,838 + RR42_RS23660 0.54 +1.2 633,838 + RR42_RS23660 0.54 +0.7 633,838 + RR42_RS23660 0.54 -0.0 633,839 - RR42_RS23660 0.54 -1.8 633,839 - RR42_RS23660 0.54 +0.9 633,839 - RR42_RS23660 0.54 -0.1 633,839 - RR42_RS23660 0.54 +0.5 633,839 - RR42_RS23660 0.54 +0.3 633,886 - RR42_RS23660 0.69 -0.7 633,973 - +3.1 634,250 + +1.0 634,250 + -0.4 634,250 + +0.5 634,250 + -0.7 634,251 - -0.8 634,251 - +0.1 634,251 - -1.2 634,267 + -0.1 634,526 - -0.0 634,616 - +0.2 634,722 + -1.5 634,722 + +0.2 634,722 + -0.4 634,722 + +0.1 634,722 + -0.8 634,722 + +0.1 634,722 + +1.3 634,723 - +0.7 634,723 - +0.2 634,775 + -0.0 634,776 - -0.6 634,777 + -0.6 634,777 + -0.6 634,778 - -0.6 634,778 - -0.1 634,778 - +0.0 634,778 - +0.2 634,778 - +0.2 634,778 - +1.3 634,827 + -0.4 634,827 + -1.8 634,859 - +1.7 634,920 - -0.8 634,925 + -0.9 634,925 + -0.8 634,925 + +0.9 634,926 - -0.0 634,986 - -1.1
Or see this region's nucleotide sequence