Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20875

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS20870 and RR42_RS20875 are separated by 499 nucleotidesRR42_RS20875 and RR42_RS20880 are separated by 337 nucleotidesRR42_RS20880 and RR42_RS20885 are separated by 99 nucleotides RR42_RS20870: RR42_RS20870 - integrase, at 5,147 to 6,730 _RS20870 RR42_RS20875: RR42_RS20875 - LuxR family transcriptional regulator, at 7,230 to 8,090 _RS20875 RR42_RS20880: RR42_RS20880 - hypothetical protein, at 8,428 to 8,877 _RS20880 RR42_RS20885: RR42_RS20885 - hypothetical protein, at 8,977 to 9,243 _RS20885 Position (kb) 7 8 9Strain fitness (log2 ratio) -2 -1 0 1 2at 6.787 kb on + strandat 6.803 kb on + strandat 6.939 kb on + strandat 6.939 kb on + strandat 6.940 kb on - strandat 6.972 kb on + strandat 7.102 kb on + strandat 7.102 kb on + strandat 7.136 kb on - strandat 7.157 kb on - strandat 7.209 kb on - strandat 7.342 kb on + strand, within RR42_RS20875at 7.343 kb on - strand, within RR42_RS20875at 7.343 kb on - strand, within RR42_RS20875at 7.343 kb on - strand, within RR42_RS20875at 7.343 kb on - strand, within RR42_RS20875at 7.343 kb on - strand, within RR42_RS20875at 7.343 kb on - strand, within RR42_RS20875at 7.348 kb on - strand, within RR42_RS20875at 7.387 kb on - strand, within RR42_RS20875at 7.691 kb on + strand, within RR42_RS20875at 7.691 kb on + strand, within RR42_RS20875at 7.692 kb on - strand, within RR42_RS20875at 7.692 kb on - strand, within RR42_RS20875at 7.811 kb on + strand, within RR42_RS20875at 7.812 kb on - strand, within RR42_RS20875at 7.812 kb on - strand, within RR42_RS20875at 7.812 kb on - strand, within RR42_RS20875at 7.814 kb on + strand, within RR42_RS20875at 7.814 kb on + strand, within RR42_RS20875at 7.814 kb on + strand, within RR42_RS20875at 7.817 kb on + strand, within RR42_RS20875at 7.831 kb on - strand, within RR42_RS20875at 7.972 kb on - strand, within RR42_RS20875at 8.096 kb on - strandat 8.211 kb on + strandat 8.211 kb on + strandat 8.310 kb on - strandat 8.325 kb on - strandat 8.325 kb on - strandat 8.383 kb on - strandat 8.561 kb on + strand, within RR42_RS20880at 8.562 kb on - strand, within RR42_RS20880at 8.707 kb on + strand, within RR42_RS20880at 8.707 kb on + strand, within RR42_RS20880at 8.864 kb on - strandat 8.900 kb on + strandat 8.901 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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6,787 + -2.1
6,803 + -1.7
6,939 + +0.1
6,939 + -0.3
6,940 - -0.3
6,972 + -0.8
7,102 + +0.0
7,102 + -0.5
7,136 - -2.3
7,157 - +0.5
7,209 - +1.8
7,342 + RR42_RS20875 0.13 -1.3
7,343 - RR42_RS20875 0.13 -0.2
7,343 - RR42_RS20875 0.13 -1.3
7,343 - RR42_RS20875 0.13 -0.2
7,343 - RR42_RS20875 0.13 -1.2
7,343 - RR42_RS20875 0.13 +0.2
7,343 - RR42_RS20875 0.13 -0.2
7,348 - RR42_RS20875 0.14 +1.1
7,387 - RR42_RS20875 0.18 -0.3
7,691 + RR42_RS20875 0.54 +0.2
7,691 + RR42_RS20875 0.54 +0.0
7,692 - RR42_RS20875 0.54 -0.3
7,692 - RR42_RS20875 0.54 +0.2
7,811 + RR42_RS20875 0.67 +0.4
7,812 - RR42_RS20875 0.68 +1.8
7,812 - RR42_RS20875 0.68 -0.5
7,812 - RR42_RS20875 0.68 -0.5
7,814 + RR42_RS20875 0.68 -1.8
7,814 + RR42_RS20875 0.68 +0.7
7,814 + RR42_RS20875 0.68 -0.8
7,817 + RR42_RS20875 0.68 -0.3
7,831 - RR42_RS20875 0.70 -0.2
7,972 - RR42_RS20875 0.86 +0.9
8,096 - -1.6
8,211 + +0.2
8,211 + +0.3
8,310 - -0.3
8,325 - +1.6
8,325 - +0.4
8,383 - -0.4
8,561 + RR42_RS20880 0.30 +0.1
8,562 - RR42_RS20880 0.30 -0.7
8,707 + RR42_RS20880 0.62 -2.7
8,707 + RR42_RS20880 0.62 -0.7
8,864 - -0.4
8,900 + -0.4
8,901 - +0.5

Or see this region's nucleotide sequence