Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17170

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS17160 and RR42_RS17165 are separated by 19 nucleotidesRR42_RS17165 and RR42_RS17170 are separated by 117 nucleotidesRR42_RS17170 and RR42_RS17175 are separated by 189 nucleotides RR42_RS17160: RR42_RS17160 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 3,715,572 to 3,716,588 _RS17160 RR42_RS17165: RR42_RS17165 - hypothetical protein, at 3,716,608 to 3,716,919 _RS17165 RR42_RS17170: RR42_RS17170 - argininosuccinate synthase, at 3,717,037 to 3,718,266 _RS17170 RR42_RS17175: RR42_RS17175 - ornithine carbamoyltransferase, at 3,718,456 to 3,719,379 _RS17175 Position (kb) 3717 3718 3719Strain fitness (log2 ratio) -2 -1 0 1 2at 3716.586 kb on + strandat 3716.587 kb on - strandat 3716.627 kb on + strandat 3716.699 kb on + strand, within RR42_RS17165at 3716.699 kb on + strand, within RR42_RS17165at 3716.699 kb on + strand, within RR42_RS17165at 3716.700 kb on - strand, within RR42_RS17165at 3716.899 kb on + strandat 3716.900 kb on - strandat 3716.900 kb on - strandat 3716.900 kb on - strandat 3716.922 kb on + strandat 3716.922 kb on + strandat 3716.922 kb on + strandat 3716.922 kb on + strandat 3718.288 kb on - strandat 3718.460 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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3,716,586 + +0.2
3,716,587 - +0.0
3,716,627 + -0.2
3,716,699 + RR42_RS17165 0.29 -1.1
3,716,699 + RR42_RS17165 0.29 +0.1
3,716,699 + RR42_RS17165 0.29 +2.1
3,716,700 - RR42_RS17165 0.29 -0.7
3,716,899 + -1.3
3,716,900 - -2.2
3,716,900 - +1.0
3,716,900 - -0.3
3,716,922 + -0.2
3,716,922 + -0.4
3,716,922 + -1.5
3,716,922 + +0.4
3,718,288 - +1.7
3,718,460 + -0.1

Or see this region's nucleotide sequence