Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11855

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS11845 and RR42_RS11850 are separated by 11 nucleotidesRR42_RS11850 and RR42_RS11855 are separated by 37 nucleotidesRR42_RS11855 and RR42_RS11860 are separated by 53 nucleotidesRR42_RS11860 and RR42_RS11865 are separated by 120 nucleotides RR42_RS11845: RR42_RS11845 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 2,533,165 to 2,534,343 _RS11845 RR42_RS11850: RR42_RS11850 - phosphatidate cytidylyltransferase, at 2,534,355 to 2,535,176 _RS11850 RR42_RS11855: RR42_RS11855 - UDP diphosphate synthase, at 2,535,214 to 2,535,987 _RS11855 RR42_RS11860: RR42_RS11860 - ribosome recycling factor, at 2,536,041 to 2,536,601 _RS11860 RR42_RS11865: RR42_RS11865 - uridylate kinase, at 2,536,722 to 2,537,432 _RS11865 Position (kb) 2535 2536Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2534.363 kb on - strandat 2534.363 kb on - strandat 2534.363 kb on - strandat 2534.363 kb on - strandat 2536.622 kb on - strandat 2536.723 kb on + strandat 2536.724 kb on - strandat 2536.726 kb on - strandat 2536.726 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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2,534,363 - +1.1
2,534,363 - +0.4
2,534,363 - -0.6
2,534,363 - -1.4
2,536,622 - -0.4
2,536,723 + -2.0
2,536,724 - +0.6
2,536,726 - +3.4
2,536,726 - -0.3

Or see this region's nucleotide sequence