Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05655

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05645 and RR42_RS05650 are separated by 33 nucleotidesRR42_RS05650 and RR42_RS05655 are separated by 240 nucleotidesRR42_RS05655 and RR42_RS05660 are separated by 66 nucleotidesRR42_RS05660 and RR42_RS05665 are separated by 44 nucleotides RR42_RS05645: RR42_RS05645 - urea ABC transporter ATP-binding protein, at 1,243,830 to 1,244,678 _RS05645 RR42_RS05650: RR42_RS05650 - urea ABC transporter ATP-binding protein, at 1,244,712 to 1,245,404 _RS05650 RR42_RS05655: RR42_RS05655 - urease accessory protein UreD, at 1,245,645 to 1,246,517 _RS05655 RR42_RS05660: RR42_RS05660 - urease subunit gamma, at 1,246,584 to 1,246,886 _RS05660 RR42_RS05665: RR42_RS05665 - urease accessory protein UreJ, at 1,246,931 to 1,247,563 _RS05665 Position (kb) 1245 1246 1247Strain fitness (log2 ratio) -1 0 1 2at 1244.664 kb on + strandat 1244.711 kb on + strandat 1244.712 kb on - strandat 1244.868 kb on - strand, within RR42_RS05650at 1244.868 kb on - strand, within RR42_RS05650at 1245.050 kb on + strand, within RR42_RS05650at 1245.054 kb on + strand, within RR42_RS05650at 1245.055 kb on - strand, within RR42_RS05650at 1245.282 kb on + strand, within RR42_RS05650at 1245.282 kb on + strand, within RR42_RS05650at 1245.283 kb on - strand, within RR42_RS05650at 1245.315 kb on + strand, within RR42_RS05650at 1245.316 kb on - strand, within RR42_RS05650at 1245.430 kb on + strandat 1245.431 kb on - strandat 1245.586 kb on + strandat 1245.587 kb on - strandat 1245.789 kb on + strand, within RR42_RS05655at 1245.789 kb on + strand, within RR42_RS05655at 1245.790 kb on - strand, within RR42_RS05655at 1245.927 kb on + strand, within RR42_RS05655at 1245.927 kb on + strand, within RR42_RS05655at 1246.283 kb on - strand, within RR42_RS05655at 1246.516 kb on - strandat 1246.516 kb on - strandat 1247.418 kb on - strand, within RR42_RS05665

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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1,244,664 + -1.1
1,244,711 + +0.7
1,244,712 - +1.1
1,244,868 - RR42_RS05650 0.23 +2.5
1,244,868 - RR42_RS05650 0.23 -0.9
1,245,050 + RR42_RS05650 0.49 -0.0
1,245,054 + RR42_RS05650 0.49 +0.5
1,245,055 - RR42_RS05650 0.49 -1.3
1,245,282 + RR42_RS05650 0.82 -1.1
1,245,282 + RR42_RS05650 0.82 +0.5
1,245,283 - RR42_RS05650 0.82 +0.2
1,245,315 + RR42_RS05650 0.87 -0.5
1,245,316 - RR42_RS05650 0.87 -0.5
1,245,430 + -0.1
1,245,431 - -0.9
1,245,586 + +0.0
1,245,587 - -0.9
1,245,789 + RR42_RS05655 0.16 +2.4
1,245,789 + RR42_RS05655 0.16 +1.0
1,245,790 - RR42_RS05655 0.17 -0.3
1,245,927 + RR42_RS05655 0.32 -0.2
1,245,927 + RR42_RS05655 0.32 -0.3
1,246,283 - RR42_RS05655 0.73 -0.0
1,246,516 - +1.9
1,246,516 - +1.2
1,247,418 - RR42_RS05665 0.77 +1.0

Or see this region's nucleotide sequence