Experiment: Azelaic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS05645 and RR42_RS05650 are separated by 33 nucleotides RR42_RS05650 and RR42_RS05655 are separated by 240 nucleotides RR42_RS05655 and RR42_RS05660 are separated by 66 nucleotides RR42_RS05660 and RR42_RS05665 are separated by 44 nucleotides
RR42_RS05645: RR42_RS05645 - urea ABC transporter ATP-binding protein, at 1,243,830 to 1,244,678
_RS05645
RR42_RS05650: RR42_RS05650 - urea ABC transporter ATP-binding protein, at 1,244,712 to 1,245,404
_RS05650
RR42_RS05655: RR42_RS05655 - urease accessory protein UreD, at 1,245,645 to 1,246,517
_RS05655
RR42_RS05660: RR42_RS05660 - urease subunit gamma, at 1,246,584 to 1,246,886
_RS05660
RR42_RS05665: RR42_RS05665 - urease accessory protein UreJ, at 1,246,931 to 1,247,563
_RS05665
Position (kb)
1245
1246
1247 Strain fitness (log2 ratio)
-1
0
1
2 at 1244.664 kb on + strand at 1244.711 kb on + strand at 1244.712 kb on - strand at 1244.868 kb on - strand, within RR42_RS05650 at 1244.868 kb on - strand, within RR42_RS05650 at 1245.050 kb on + strand, within RR42_RS05650 at 1245.054 kb on + strand, within RR42_RS05650 at 1245.055 kb on - strand, within RR42_RS05650 at 1245.282 kb on + strand, within RR42_RS05650 at 1245.282 kb on + strand, within RR42_RS05650 at 1245.283 kb on - strand, within RR42_RS05650 at 1245.315 kb on + strand, within RR42_RS05650 at 1245.316 kb on - strand, within RR42_RS05650 at 1245.430 kb on + strand at 1245.431 kb on - strand at 1245.586 kb on + strand at 1245.587 kb on - strand at 1245.789 kb on + strand, within RR42_RS05655 at 1245.789 kb on + strand, within RR42_RS05655 at 1245.790 kb on - strand, within RR42_RS05655 at 1245.927 kb on + strand, within RR42_RS05655 at 1245.927 kb on + strand, within RR42_RS05655 at 1246.283 kb on - strand, within RR42_RS05655 at 1246.516 kb on - strand at 1246.516 kb on - strand at 1247.418 kb on - strand, within RR42_RS05665
Per-strain Table
Position Strand Gene LocusTag Fraction Azelaic (C) remove 1,244,664 + -1.1 1,244,711 + +0.7 1,244,712 - +1.1 1,244,868 - RR42_RS05650 0.23 +2.5 1,244,868 - RR42_RS05650 0.23 -0.9 1,245,050 + RR42_RS05650 0.49 -0.0 1,245,054 + RR42_RS05650 0.49 +0.5 1,245,055 - RR42_RS05650 0.49 -1.3 1,245,282 + RR42_RS05650 0.82 -1.1 1,245,282 + RR42_RS05650 0.82 +0.5 1,245,283 - RR42_RS05650 0.82 +0.2 1,245,315 + RR42_RS05650 0.87 -0.5 1,245,316 - RR42_RS05650 0.87 -0.5 1,245,430 + -0.1 1,245,431 - -0.9 1,245,586 + +0.0 1,245,587 - -0.9 1,245,789 + RR42_RS05655 0.16 +2.4 1,245,789 + RR42_RS05655 0.16 +1.0 1,245,790 - RR42_RS05655 0.17 -0.3 1,245,927 + RR42_RS05655 0.32 -0.2 1,245,927 + RR42_RS05655 0.32 -0.3 1,246,283 - RR42_RS05655 0.73 -0.0 1,246,516 - +1.9 1,246,516 - +1.2 1,247,418 - RR42_RS05665 0.77 +1.0
Or see this region's nucleotide sequence