Experiment: Azelaic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03355 and RR42_RS03360 are separated by 64 nucleotides RR42_RS03360 and RR42_RS03365 are separated by 103 nucleotides
RR42_RS03355: RR42_RS03355 - N-acylmannosamine kinase, at 745,313 to 746,572
_RS03355
RR42_RS03360: RR42_RS03360 - fructose ABC transporter, ATPase component (FrcA) <small>(from data)</small>, at 746,637 to 748,250
_RS03360
RR42_RS03365: RR42_RS03365 - fructose ABC transporter, permease component (FrcC) <small>(from data)</small>, at 748,354 to 749,355
_RS03365
Position (kb) 746
747
748
749 Strain fitness (log2 ratio) -2
-1
0
1 at 745.784 kb on + strand, within RR42_RS03355 at 745.784 kb on + strand, within RR42_RS03355 at 745.785 kb on - strand, within RR42_RS03355 at 745.952 kb on + strand, within RR42_RS03355 at 745.982 kb on + strand, within RR42_RS03355 at 745.982 kb on + strand, within RR42_RS03355 at 745.982 kb on + strand, within RR42_RS03355 at 745.982 kb on + strand, within RR42_RS03355 at 745.983 kb on - strand, within RR42_RS03355 at 745.983 kb on - strand, within RR42_RS03355 at 746.180 kb on + strand, within RR42_RS03355 at 746.627 kb on + strand at 746.681 kb on + strand at 746.736 kb on + strand at 746.814 kb on + strand, within RR42_RS03360 at 746.815 kb on - strand, within RR42_RS03360 at 746.816 kb on + strand, within RR42_RS03360 at 746.910 kb on + strand, within RR42_RS03360 at 747.240 kb on + strand, within RR42_RS03360 at 747.240 kb on + strand, within RR42_RS03360 at 747.240 kb on + strand, within RR42_RS03360 at 747.241 kb on - strand, within RR42_RS03360 at 747.241 kb on - strand, within RR42_RS03360 at 747.241 kb on - strand, within RR42_RS03360 at 747.242 kb on + strand, within RR42_RS03360 at 747.390 kb on + strand, within RR42_RS03360 at 747.390 kb on + strand, within RR42_RS03360 at 747.390 kb on + strand, within RR42_RS03360 at 747.675 kb on + strand, within RR42_RS03360 at 748.467 kb on - strand, within RR42_RS03365 at 748.875 kb on - strand, within RR42_RS03365 at 748.967 kb on - strand, within RR42_RS03365 at 749.038 kb on + strand, within RR42_RS03365 at 749.039 kb on - strand, within RR42_RS03365 at 749.095 kb on + strand, within RR42_RS03365 at 749.129 kb on - strand, within RR42_RS03365
Per-strain Table
Position Strand Gene LocusTag Fraction Azelaic (C) remove 745,784 + RR42_RS03355 0.37 +1.2 745,784 + RR42_RS03355 0.37 +0.9 745,785 - RR42_RS03355 0.37 +0.6 745,952 + RR42_RS03355 0.51 -0.3 745,982 + RR42_RS03355 0.53 +0.4 745,982 + RR42_RS03355 0.53 -1.5 745,982 + RR42_RS03355 0.53 -0.6 745,982 + RR42_RS03355 0.53 -1.3 745,983 - RR42_RS03355 0.53 -0.4 745,983 - RR42_RS03355 0.53 +0.0 746,180 + RR42_RS03355 0.69 -0.4 746,627 + +1.6 746,681 + +1.6 746,736 + -1.2 746,814 + RR42_RS03360 0.11 -1.2 746,815 - RR42_RS03360 0.11 -1.6 746,816 + RR42_RS03360 0.11 +1.6 746,910 + RR42_RS03360 0.17 +0.8 747,240 + RR42_RS03360 0.37 -1.4 747,240 + RR42_RS03360 0.37 -1.6 747,240 + RR42_RS03360 0.37 -0.7 747,241 - RR42_RS03360 0.37 +1.6 747,241 - RR42_RS03360 0.37 +1.6 747,241 - RR42_RS03360 0.37 -1.2 747,242 + RR42_RS03360 0.37 -0.7 747,390 + RR42_RS03360 0.47 +0.0 747,390 + RR42_RS03360 0.47 -1.8 747,390 + RR42_RS03360 0.47 +0.6 747,675 + RR42_RS03360 0.64 -0.7 748,467 - RR42_RS03365 0.11 +1.6 748,875 - RR42_RS03365 0.52 -1.2 748,967 - RR42_RS03365 0.61 +1.6 749,038 + RR42_RS03365 0.68 +0.2 749,039 - RR42_RS03365 0.68 +0.6 749,095 + RR42_RS03365 0.74 +0.6 749,129 - RR42_RS03365 0.77 -1.0
Or see this region's nucleotide sequence