Experiment: Azelaic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02635 and RR42_RS02640 are separated by 34 nucleotides RR42_RS02640 and RR42_RS02645 are separated by 110 nucleotides RR42_RS02645 and RR42_RS02650 are separated by 72 nucleotides
RR42_RS02635: RR42_RS02635 - DNA-binding protein, at 590,525 to 591,274
_RS02635
RR42_RS02640: RR42_RS02640 - membrane protein, at 591,309 to 591,722
_RS02640
RR42_RS02645: RR42_RS02645 - iron--sulfur cluster insertion protein ErpA, at 591,833 to 592,201
_RS02645
RR42_RS02650: RR42_RS02650 - phytanoyl-CoA dioxygenase, at 592,274 to 593,071
_RS02650
Position (kb) 591
592 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 590.380 kb on + strand at 590.380 kb on + strand at 590.381 kb on - strand at 590.381 kb on - strand at 590.381 kb on - strand at 590.381 kb on - strand at 590.393 kb on + strand at 590.393 kb on + strand at 590.393 kb on + strand at 590.393 kb on + strand at 590.400 kb on - strand at 590.418 kb on + strand at 590.531 kb on + strand at 590.531 kb on + strand at 590.532 kb on - strand at 590.675 kb on + strand, within RR42_RS02635 at 590.710 kb on + strand, within RR42_RS02635 at 590.710 kb on + strand, within RR42_RS02635 at 590.711 kb on - strand, within RR42_RS02635 at 590.929 kb on + strand, within RR42_RS02635 at 590.930 kb on - strand, within RR42_RS02635 at 590.930 kb on - strand, within RR42_RS02635 at 590.996 kb on + strand, within RR42_RS02635 at 591.010 kb on - strand, within RR42_RS02635 at 591.063 kb on + strand, within RR42_RS02635 at 591.063 kb on + strand, within RR42_RS02635 at 591.063 kb on + strand, within RR42_RS02635 at 591.064 kb on - strand, within RR42_RS02635 at 591.064 kb on - strand, within RR42_RS02635 at 591.064 kb on - strand, within RR42_RS02635 at 591.064 kb on - strand, within RR42_RS02635 at 591.064 kb on - strand, within RR42_RS02635 at 591.064 kb on - strand, within RR42_RS02635 at 591.208 kb on - strand at 591.308 kb on + strand at 591.308 kb on + strand at 591.308 kb on + strand at 591.308 kb on + strand at 591.308 kb on + strand at 591.308 kb on + strand at 591.308 kb on + strand at 591.308 kb on + strand at 591.308 kb on + strand at 591.308 kb on + strand at 591.308 kb on + strand at 591.308 kb on + strand at 591.308 kb on + strand at 591.308 kb on + strand at 591.309 kb on - strand at 591.309 kb on - strand at 591.309 kb on - strand at 591.309 kb on - strand at 591.309 kb on - strand at 591.309 kb on - strand at 591.309 kb on - strand at 591.309 kb on - strand at 591.309 kb on - strand at 591.309 kb on - strand at 591.309 kb on - strand at 591.309 kb on - strand at 591.309 kb on - strand at 591.309 kb on - strand at 591.309 kb on - strand at 591.309 kb on - strand at 591.345 kb on - strand at 591.600 kb on + strand, within RR42_RS02640 at 591.600 kb on + strand, within RR42_RS02640 at 591.601 kb on - strand, within RR42_RS02640 at 591.601 kb on - strand, within RR42_RS02640 at 591.601 kb on - strand, within RR42_RS02640 at 591.813 kb on + strand at 591.813 kb on + strand at 591.813 kb on + strand at 591.813 kb on + strand at 591.813 kb on + strand at 591.813 kb on + strand at 591.817 kb on + strand at 591.817 kb on + strand at 591.817 kb on + strand at 591.817 kb on + strand at 591.817 kb on + strand at 591.821 kb on + strand at 592.197 kb on + strand at 592.199 kb on + strand at 592.200 kb on - strand at 592.259 kb on + strand at 592.260 kb on - strand at 592.383 kb on + strand, within RR42_RS02650 at 592.383 kb on + strand, within RR42_RS02650 at 592.461 kb on - strand, within RR42_RS02650 at 592.461 kb on - strand, within RR42_RS02650 at 592.461 kb on - strand, within RR42_RS02650 at 592.573 kb on - strand, within RR42_RS02650 at 592.651 kb on + strand, within RR42_RS02650 at 592.651 kb on + strand, within RR42_RS02650 at 592.651 kb on + strand, within RR42_RS02650 at 592.651 kb on + strand, within RR42_RS02650 at 592.652 kb on - strand, within RR42_RS02650 at 592.652 kb on - strand, within RR42_RS02650 at 592.686 kb on + strand, within RR42_RS02650 at 592.687 kb on - strand, within RR42_RS02650 at 592.716 kb on + strand, within RR42_RS02650 at 592.716 kb on + strand, within RR42_RS02650 at 592.716 kb on + strand, within RR42_RS02650 at 592.716 kb on + strand, within RR42_RS02650 at 592.719 kb on + strand, within RR42_RS02650 at 592.720 kb on - strand, within RR42_RS02650
Per-strain Table
Position Strand Gene LocusTag Fraction Azelaic (C) remove 590,380 + -0.3 590,380 + +0.0 590,381 - +0.5 590,381 - +0.5 590,381 - -0.0 590,381 - -1.6 590,393 + +1.2 590,393 + -0.3 590,393 + -1.3 590,393 + +0.1 590,400 - -0.3 590,418 + +0.8 590,531 + -0.2 590,531 + -0.6 590,532 - -1.0 590,675 + RR42_RS02635 0.20 -0.4 590,710 + RR42_RS02635 0.25 +0.4 590,710 + RR42_RS02635 0.25 -0.6 590,711 - RR42_RS02635 0.25 +0.6 590,929 + RR42_RS02635 0.54 +1.0 590,930 - RR42_RS02635 0.54 +0.8 590,930 - RR42_RS02635 0.54 +0.4 590,996 + RR42_RS02635 0.63 +0.7 591,010 - RR42_RS02635 0.65 +0.4 591,063 + RR42_RS02635 0.72 -0.4 591,063 + RR42_RS02635 0.72 -0.8 591,063 + RR42_RS02635 0.72 +1.2 591,064 - RR42_RS02635 0.72 +0.5 591,064 - RR42_RS02635 0.72 -2.4 591,064 - RR42_RS02635 0.72 +1.2 591,064 - RR42_RS02635 0.72 +0.7 591,064 - RR42_RS02635 0.72 +0.7 591,064 - RR42_RS02635 0.72 -0.3 591,208 - -0.5 591,308 + -0.2 591,308 + -0.8 591,308 + +0.9 591,308 + +1.7 591,308 + -1.2 591,308 + +0.0 591,308 + +0.1 591,308 + -1.3 591,308 + +0.8 591,308 + +0.3 591,308 + +0.9 591,308 + +0.1 591,308 + +0.7 591,308 + +1.5 591,309 - +0.1 591,309 - +0.0 591,309 - +0.1 591,309 - -2.2 591,309 - +0.3 591,309 - -1.1 591,309 - +0.1 591,309 - -0.7 591,309 - +0.5 591,309 - -0.7 591,309 - -0.8 591,309 - +0.3 591,309 - +0.7 591,309 - +0.9 591,309 - +0.6 591,309 - +0.2 591,345 - +1.7 591,600 + RR42_RS02640 0.70 +0.1 591,600 + RR42_RS02640 0.70 +1.3 591,601 - RR42_RS02640 0.71 +1.5 591,601 - RR42_RS02640 0.71 -2.4 591,601 - RR42_RS02640 0.71 -0.2 591,813 + -2.1 591,813 + +0.9 591,813 + -1.6 591,813 + -0.4 591,813 + -1.2 591,813 + -0.1 591,817 + -1.5 591,817 + +1.1 591,817 + -1.3 591,817 + -1.3 591,817 + -1.8 591,821 + -0.4 592,197 + -0.3 592,199 + +0.6 592,200 - -0.3 592,259 + -0.0 592,260 - -1.3 592,383 + RR42_RS02650 0.14 +1.7 592,383 + RR42_RS02650 0.14 +0.8 592,461 - RR42_RS02650 0.23 -1.0 592,461 - RR42_RS02650 0.23 -2.1 592,461 - RR42_RS02650 0.23 +0.1 592,573 - RR42_RS02650 0.37 -0.4 592,651 + RR42_RS02650 0.47 -0.3 592,651 + RR42_RS02650 0.47 +1.2 592,651 + RR42_RS02650 0.47 +0.5 592,651 + RR42_RS02650 0.47 +0.2 592,652 - RR42_RS02650 0.47 +0.7 592,652 - RR42_RS02650 0.47 +0.9 592,686 + RR42_RS02650 0.52 +0.5 592,687 - RR42_RS02650 0.52 -0.4 592,716 + RR42_RS02650 0.55 +0.9 592,716 + RR42_RS02650 0.55 +0.5 592,716 + RR42_RS02650 0.55 -2.8 592,716 + RR42_RS02650 0.55 -2.1 592,719 + RR42_RS02650 0.56 +1.7 592,720 - RR42_RS02650 0.56 +0.6
Or see this region's nucleotide sequence