Experiment: Azelaic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00235 and RR42_RS00240 are separated by 93 nucleotides RR42_RS00240 and RR42_RS00245 are separated by 253 nucleotides RR42_RS00245 and RR42_RS00250 are separated by 17 nucleotides
RR42_RS00235: RR42_RS00235 - membrane protein, at 72,667 to 73,938
_RS00235
RR42_RS00240: RR42_RS00240 - nucleotide pyrophosphohydrolase, at 74,032 to 74,367
_RS00240
RR42_RS00245: RR42_RS00245 - microcystin degradation protein MlrC, at 74,621 to 76,102
_RS00245
RR42_RS00250: RR42_RS00250 - GntR family transcriptional regulator, at 76,120 to 77,166
_RS00250
Position (kb) 74
75
76
77 Strain fitness (log2 ratio) -2
-1
0
1
2 at 73.771 kb on - strand, within RR42_RS00235 at 73.850 kb on - strand at 73.944 kb on - strand at 74.010 kb on + strand at 74.104 kb on + strand, within RR42_RS00240 at 74.105 kb on - strand, within RR42_RS00240 at 74.105 kb on - strand, within RR42_RS00240 at 74.105 kb on - strand, within RR42_RS00240 at 74.105 kb on - strand, within RR42_RS00240 at 74.257 kb on + strand, within RR42_RS00240 at 74.258 kb on - strand, within RR42_RS00240 at 74.659 kb on + strand at 74.660 kb on - strand at 74.660 kb on - strand at 74.850 kb on - strand, within RR42_RS00245 at 75.081 kb on - strand, within RR42_RS00245 at 75.099 kb on - strand, within RR42_RS00245 at 75.314 kb on - strand, within RR42_RS00245 at 75.428 kb on + strand, within RR42_RS00245 at 75.768 kb on - strand, within RR42_RS00245 at 75.768 kb on - strand, within RR42_RS00245 at 75.789 kb on - strand, within RR42_RS00245 at 75.896 kb on - strand, within RR42_RS00245 at 75.953 kb on + strand, within RR42_RS00245 at 75.953 kb on + strand, within RR42_RS00245 at 76.100 kb on + strand at 76.101 kb on - strand at 76.130 kb on + strand at 76.130 kb on + strand at 76.131 kb on - strand at 76.131 kb on - strand at 76.199 kb on - strand at 76.461 kb on - strand, within RR42_RS00250 at 76.666 kb on + strand, within RR42_RS00250 at 76.666 kb on + strand, within RR42_RS00250 at 76.667 kb on - strand, within RR42_RS00250 at 76.779 kb on - strand, within RR42_RS00250 at 76.779 kb on - strand, within RR42_RS00250 at 77.006 kb on - strand, within RR42_RS00250 at 77.069 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Azelaic (C) remove 73,771 - RR42_RS00235 0.87 -0.6 73,850 - -0.8 73,944 - -0.1 74,010 + +1.0 74,104 + RR42_RS00240 0.21 -0.8 74,105 - RR42_RS00240 0.22 +0.8 74,105 - RR42_RS00240 0.22 +1.8 74,105 - RR42_RS00240 0.22 -1.6 74,105 - RR42_RS00240 0.22 +0.2 74,257 + RR42_RS00240 0.67 -0.6 74,258 - RR42_RS00240 0.67 +0.4 74,659 + -0.0 74,660 - -0.3 74,660 - -1.4 74,850 - RR42_RS00245 0.15 -0.5 75,081 - RR42_RS00245 0.31 -0.3 75,099 - RR42_RS00245 0.32 +0.0 75,314 - RR42_RS00245 0.47 -1.2 75,428 + RR42_RS00245 0.54 -1.1 75,768 - RR42_RS00245 0.77 -0.8 75,768 - RR42_RS00245 0.77 -0.8 75,789 - RR42_RS00245 0.79 -0.6 75,896 - RR42_RS00245 0.86 -0.2 75,953 + RR42_RS00245 0.90 -0.2 75,953 + RR42_RS00245 0.90 +0.5 76,100 + -0.2 76,101 - -0.9 76,130 + +0.4 76,130 + -1.3 76,131 - -1.5 76,131 - -0.8 76,199 - -1.8 76,461 - RR42_RS00250 0.33 -0.4 76,666 + RR42_RS00250 0.52 +0.5 76,666 + RR42_RS00250 0.52 +1.8 76,667 - RR42_RS00250 0.52 +0.3 76,779 - RR42_RS00250 0.63 -0.2 76,779 - RR42_RS00250 0.63 +0.3 77,006 - RR42_RS00250 0.85 +0.6 77,069 + -0.6
Or see this region's nucleotide sequence