Experiment: Azelaic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00160 and RR42_RS00165 are separated by 741 nucleotides
RR42_RS00160: RR42_RS00160 - hypothetical protein, at 56,863 to 57,081
_RS00160
RR42_RS00165: RR42_RS00165 - hypothetical protein, at 57,823 to 58,116
_RS00165
Position (kb) 56
57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 55.937 kb on - strand at 55.971 kb on + strand at 56.072 kb on + strand at 56.073 kb on - strand at 56.172 kb on + strand at 56.172 kb on + strand at 56.182 kb on - strand at 56.191 kb on - strand at 56.195 kb on + strand at 56.195 kb on + strand at 56.196 kb on - strand at 56.196 kb on - strand at 56.196 kb on - strand at 56.256 kb on + strand at 56.285 kb on - strand at 56.285 kb on - strand at 56.288 kb on + strand at 56.288 kb on + strand at 56.344 kb on + strand at 56.378 kb on + strand at 56.379 kb on - strand at 56.379 kb on - strand at 56.457 kb on + strand at 56.457 kb on + strand at 56.543 kb on - strand at 56.546 kb on - strand at 56.606 kb on + strand at 56.627 kb on - strand at 56.790 kb on + strand at 57.140 kb on - strand at 57.240 kb on + strand at 57.318 kb on + strand at 57.383 kb on + strand at 57.384 kb on - strand at 57.487 kb on + strand at 57.488 kb on - strand at 57.535 kb on - strand at 57.535 kb on - strand at 57.535 kb on - strand at 57.553 kb on + strand at 57.553 kb on + strand at 57.553 kb on + strand at 57.554 kb on - strand at 57.554 kb on - strand at 57.554 kb on - strand at 57.554 kb on - strand at 57.554 kb on - strand at 57.554 kb on - strand at 57.557 kb on + strand at 57.557 kb on + strand at 57.580 kb on + strand at 57.581 kb on - strand at 57.627 kb on + strand at 57.654 kb on - strand at 57.956 kb on - strand, within RR42_RS00165
Per-strain Table
Position Strand Gene LocusTag Fraction Azelaic (C) remove 55,937 - -2.4 55,971 + -2.0 56,072 + -0.2 56,073 - -0.3 56,172 + +0.2 56,172 + -0.0 56,182 - -1.2 56,191 - +0.0 56,195 + +0.3 56,195 + -1.4 56,196 - -0.2 56,196 - -1.0 56,196 - -0.1 56,256 + +0.2 56,285 - -0.2 56,285 - -0.4 56,288 + -0.6 56,288 + -0.1 56,344 + +0.8 56,378 + -1.9 56,379 - -0.6 56,379 - +0.8 56,457 + -2.1 56,457 + +0.3 56,543 - -0.3 56,546 - -1.2 56,606 + -1.9 56,627 - +0.2 56,790 + +0.5 57,140 - +0.0 57,240 + -0.6 57,318 + +0.6 57,383 + -0.6 57,384 - -2.1 57,487 + -0.1 57,488 - -3.3 57,535 - +0.1 57,535 - -1.8 57,535 - -0.4 57,553 + +0.5 57,553 + -0.3 57,553 + +0.6 57,554 - +0.6 57,554 - +0.6 57,554 - -1.0 57,554 - -0.3 57,554 - +0.6 57,554 - -0.8 57,557 + +1.5 57,557 + +0.5 57,580 + +0.3 57,581 - +0.1 57,627 + -0.2 57,654 - -0.9 57,956 - RR42_RS00165 0.45 +1.8
Or see this region's nucleotide sequence