Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0439

Experiment: Varel_Bryant_medium_Glucose with Sulfamonomethoxine 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0438 and BT0439 are separated by 134 nucleotidesBT0439 and BT0440 are separated by 14 nucleotides BT0438: BT0438 - alpha-N-acetylglucosaminidase precursor (NCBI ptt file), at 527,678 to 529,870 BT0438 BT0439: BT0439 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 530,005 to 533,124 BT0439 BT0440: BT0440 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 533,139 to 535,022 BT0440 Position (kb) 530 531 532 533 534Strain fitness (log2 ratio) -3 -2 -1 0 1at 529.016 kb on + strand, within BT0438at 529.248 kb on - strand, within BT0438at 529.647 kb on + strand, within BT0438at 529.659 kb on - strandat 529.659 kb on - strandat 529.696 kb on - strandat 529.699 kb on - strandat 529.753 kb on + strandat 529.754 kb on - strandat 529.798 kb on + strandat 529.799 kb on - strandat 529.851 kb on - strandat 529.853 kb on - strandat 530.082 kb on - strandat 530.100 kb on + strandat 530.199 kb on + strandat 530.356 kb on - strand, within BT0439at 530.356 kb on - strand, within BT0439at 530.356 kb on - strand, within BT0439at 530.365 kb on - strand, within BT0439at 530.408 kb on + strand, within BT0439at 530.413 kb on + strand, within BT0439at 530.490 kb on + strand, within BT0439at 530.529 kb on - strand, within BT0439at 530.618 kb on + strand, within BT0439at 530.646 kb on + strand, within BT0439at 530.647 kb on - strand, within BT0439at 530.658 kb on - strandat 530.744 kb on + strand, within BT0439at 530.748 kb on + strand, within BT0439at 530.781 kb on + strand, within BT0439at 530.804 kb on - strand, within BT0439at 530.938 kb on - strand, within BT0439at 531.018 kb on + strand, within BT0439at 531.052 kb on + strand, within BT0439at 531.159 kb on + strand, within BT0439at 531.245 kb on + strand, within BT0439at 531.256 kb on + strand, within BT0439at 531.257 kb on - strand, within BT0439at 531.289 kb on - strand, within BT0439at 531.297 kb on + strand, within BT0439at 531.317 kb on + strand, within BT0439at 531.321 kb on + strand, within BT0439at 531.346 kb on + strand, within BT0439at 531.347 kb on - strand, within BT0439at 531.361 kb on - strand, within BT0439at 531.406 kb on - strand, within BT0439at 531.438 kb on - strand, within BT0439at 531.463 kb on - strand, within BT0439at 531.482 kb on - strand, within BT0439at 531.520 kb on - strand, within BT0439at 531.526 kb on + strand, within BT0439at 531.526 kb on + strand, within BT0439at 531.583 kb on - strand, within BT0439at 531.589 kb on + strand, within BT0439at 531.590 kb on - strand, within BT0439at 531.591 kb on + strand, within BT0439at 531.591 kb on + strand, within BT0439at 531.624 kb on + strand, within BT0439at 531.625 kb on - strand, within BT0439at 531.625 kb on - strand, within BT0439at 531.625 kb on - strand, within BT0439at 531.706 kb on - strand, within BT0439at 531.711 kb on + strand, within BT0439at 531.716 kb on - strand, within BT0439at 531.716 kb on - strand, within BT0439at 531.716 kb on - strand, within BT0439at 531.787 kb on - strand, within BT0439at 531.893 kb on + strand, within BT0439at 531.899 kb on - strand, within BT0439at 531.939 kb on + strand, within BT0439at 532.089 kb on - strand, within BT0439at 532.089 kb on - strand, within BT0439at 532.098 kb on + strand, within BT0439at 532.225 kb on - strand, within BT0439at 532.354 kb on + strand, within BT0439at 532.355 kb on - strand, within BT0439at 532.355 kb on - strand, within BT0439at 532.422 kb on + strand, within BT0439at 532.422 kb on + strand, within BT0439at 532.641 kb on - strand, within BT0439at 532.656 kb on + strand, within BT0439at 532.723 kb on - strand, within BT0439at 532.837 kb on - strandat 532.892 kb on - strandat 532.903 kb on - strandat 532.903 kb on - strandat 532.903 kb on - strandat 532.943 kb on - strandat 532.996 kb on + strandat 533.077 kb on + strandat 533.173 kb on + strandat 533.303 kb on + strandat 533.465 kb on + strand, within BT0440at 533.486 kb on + strand, within BT0440at 533.488 kb on + strand, within BT0440at 533.540 kb on + strand, within BT0440at 533.541 kb on - strand, within BT0440at 533.581 kb on - strand, within BT0440at 533.672 kb on + strand, within BT0440at 533.714 kb on + strand, within BT0440at 533.772 kb on - strand, within BT0440at 533.838 kb on - strand, within BT0440at 533.877 kb on + strand, within BT0440at 533.934 kb on - strand, within BT0440at 533.958 kb on - strand, within BT0440at 534.092 kb on + strand, within BT0440at 534.112 kb on + strand, within BT0440

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Sulfamonomethoxine 0.2 mM
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529,016 + BT0438 0.61 +1.0
529,248 - BT0438 0.72 -1.1
529,647 + BT0438 0.90 -0.5
529,659 - -1.5
529,659 - -1.0
529,696 - -1.5
529,699 - -1.5
529,753 + -2.4
529,754 - +0.0
529,798 + -1.2
529,799 - -1.0
529,851 - -1.3
529,853 - -0.4
530,082 - -3.5
530,100 + -1.5
530,199 + +0.8
530,356 - BT0439 0.11 -2.3
530,356 - BT0439 0.11 -1.3
530,356 - BT0439 0.11 -3.0
530,365 - BT0439 0.12 -1.0
530,408 + BT0439 0.13 -2.6
530,413 + BT0439 0.13 -1.0
530,490 + BT0439 0.16 -0.4
530,529 - BT0439 0.17 -1.6
530,618 + BT0439 0.20 +0.0
530,646 + BT0439 0.21 -3.1
530,647 - BT0439 0.21 -1.0
530,658 - -1.6
530,744 + BT0439 0.24 -1.3
530,748 + BT0439 0.24 +1.0
530,781 + BT0439 0.25 -1.2
530,804 - BT0439 0.26 -1.0
530,938 - BT0439 0.30 -0.6
531,018 + BT0439 0.32 -3.0
531,052 + BT0439 0.34 -1.0
531,159 + BT0439 0.37 -1.6
531,245 + BT0439 0.40 -1.0
531,256 + BT0439 0.40 +0.0
531,257 - BT0439 0.40 +0.3
531,289 - BT0439 0.41 -2.0
531,297 + BT0439 0.41 -2.6
531,317 + BT0439 0.42 +0.0
531,321 + BT0439 0.42 +1.0
531,346 + BT0439 0.43 -2.3
531,347 - BT0439 0.43 -1.6
531,361 - BT0439 0.43 -3.6
531,406 - BT0439 0.45 -1.3
531,438 - BT0439 0.46 +0.0
531,463 - BT0439 0.47 -1.0
531,482 - BT0439 0.47 -2.1
531,520 - BT0439 0.49 +0.3
531,526 + BT0439 0.49 -1.1
531,526 + BT0439 0.49 +0.4
531,583 - BT0439 0.51 -1.0
531,589 + BT0439 0.51 -2.0
531,590 - BT0439 0.51 -1.0
531,591 + BT0439 0.51 -1.0
531,591 + BT0439 0.51 +0.0
531,624 + BT0439 0.52 -0.4
531,625 - BT0439 0.52 -2.3
531,625 - BT0439 0.52 -1.0
531,625 - BT0439 0.52 +0.6
531,706 - BT0439 0.55 -2.3
531,711 + BT0439 0.55 -1.6
531,716 - BT0439 0.55 -0.4
531,716 - BT0439 0.55 -2.0
531,716 - BT0439 0.55 -0.7
531,787 - BT0439 0.57 +0.6
531,893 + BT0439 0.61 -0.9
531,899 - BT0439 0.61 -2.0
531,939 + BT0439 0.62 -2.0
532,089 - BT0439 0.67 -1.6
532,089 - BT0439 0.67 +1.0
532,098 + BT0439 0.67 -1.6
532,225 - BT0439 0.71 -1.0
532,354 + BT0439 0.75 -1.6
532,355 - BT0439 0.75 -1.6
532,355 - BT0439 0.75 -3.1
532,422 + BT0439 0.77 -1.1
532,422 + BT0439 0.77 -2.3
532,641 - BT0439 0.84 -0.7
532,656 + BT0439 0.85 -0.7
532,723 - BT0439 0.87 +0.1
532,837 - -3.1
532,892 - -2.0
532,903 - -0.6
532,903 - +0.0
532,903 - +0.0
532,943 - -0.7
532,996 + +1.0
533,077 + +1.0
533,173 + -1.0
533,303 + -0.5
533,465 + BT0440 0.17 +0.0
533,486 + BT0440 0.18 +0.0
533,488 + BT0440 0.19 -0.6
533,540 + BT0440 0.21 -2.0
533,541 - BT0440 0.21 -2.3
533,581 - BT0440 0.23 -2.0
533,672 + BT0440 0.28 -1.2
533,714 + BT0440 0.31 +0.0
533,772 - BT0440 0.34 +0.0
533,838 - BT0440 0.37 -2.0
533,877 + BT0440 0.39 +0.0
533,934 - BT0440 0.42 +0.0
533,958 - BT0440 0.43 -0.8
534,092 + BT0440 0.51 -1.0
534,112 + BT0440 0.52 -1.0

Or see this region's nucleotide sequence