Experiment: Suberic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS36330 and RR42_RS36335 are separated by 185 nucleotides RR42_RS36335 and RR42_RS36340 are separated by 17 nucleotides RR42_RS36340 and RR42_RS36345 are separated by 208 nucleotides
RR42_RS36330: RR42_RS36330 - nitronate monooxygenase, at 3,603,087 to 3,604,061
_RS36330
RR42_RS36335: RR42_RS36335 - enoyl-CoA hydratase, at 3,604,247 to 3,605,134
_RS36335
RR42_RS36340: RR42_RS36340 - NADH dehydrogenase, at 3,605,152 to 3,605,823
_RS36340
RR42_RS36345: RR42_RS36345 - hydroxyproline-2-epimerase, at 3,606,032 to 3,607,000
_RS36345
Position (kb) 3604
3605
3606 Strain fitness (log2 ratio) -1
0
1 at 3603.256 kb on - strand, within RR42_RS36330 at 3603.256 kb on - strand, within RR42_RS36330 at 3603.818 kb on - strand, within RR42_RS36330 at 3603.989 kb on - strand at 3604.165 kb on + strand at 3604.165 kb on + strand at 3604.166 kb on - strand at 3604.166 kb on - strand at 3604.207 kb on + strand at 3604.207 kb on + strand at 3604.500 kb on - strand, within RR42_RS36335 at 3604.778 kb on + strand, within RR42_RS36335 at 3605.129 kb on - strand at 3605.380 kb on + strand, within RR42_RS36340 at 3605.381 kb on - strand, within RR42_RS36340 at 3605.381 kb on - strand, within RR42_RS36340 at 3605.389 kb on + strand, within RR42_RS36340 at 3605.596 kb on + strand, within RR42_RS36340 at 3605.596 kb on + strand, within RR42_RS36340 at 3605.596 kb on + strand, within RR42_RS36340 at 3605.596 kb on + strand, within RR42_RS36340 at 3605.597 kb on - strand, within RR42_RS36340 at 3605.597 kb on - strand, within RR42_RS36340 at 3605.860 kb on + strand at 3605.860 kb on + strand at 3605.928 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Suberic (C) remove 3,603,256 - RR42_RS36330 0.17 +0.8 3,603,256 - RR42_RS36330 0.17 -0.6 3,603,818 - RR42_RS36330 0.75 +0.8 3,603,989 - +0.4 3,604,165 + -0.3 3,604,165 + -1.4 3,604,166 - -0.3 3,604,166 - +0.3 3,604,207 + +1.3 3,604,207 + +0.5 3,604,500 - RR42_RS36335 0.28 +1.1 3,604,778 + RR42_RS36335 0.60 -1.1 3,605,129 - -0.9 3,605,380 + RR42_RS36340 0.34 +0.9 3,605,381 - RR42_RS36340 0.34 +0.2 3,605,381 - RR42_RS36340 0.34 -0.7 3,605,389 + RR42_RS36340 0.35 -0.7 3,605,596 + RR42_RS36340 0.66 +0.9 3,605,596 + RR42_RS36340 0.66 -0.8 3,605,596 + RR42_RS36340 0.66 -0.2 3,605,596 + RR42_RS36340 0.66 -0.5 3,605,597 - RR42_RS36340 0.66 +1.0 3,605,597 - RR42_RS36340 0.66 +0.2 3,605,860 + +1.7 3,605,860 + +1.0 3,605,928 - +0.9
Or see this region's nucleotide sequence