Experiment: Suberic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26400 and RR42_RS26405 are separated by 78 nucleotides RR42_RS26405 and RR42_RS26410 overlap by 4 nucleotides RR42_RS26410 and RR42_RS26415 are separated by 74 nucleotides RR42_RS26415 and RR42_RS26420 are separated by 43 nucleotides
RR42_RS26400: RR42_RS26400 - structural protein MipA, at 1,281,123 to 1,281,866
_RS26400
RR42_RS26405: RR42_RS26405 - hypothetical protein, at 1,281,945 to 1,282,661
_RS26405
RR42_RS26410: RR42_RS26410 - hypothetical protein, at 1,282,658 to 1,283,863
_RS26410
RR42_RS26415: RR42_RS26415 - MarR family transcriptional regulator, at 1,283,938 to 1,284,468
_RS26415
RR42_RS26420: RR42_RS26420 - dioxygenase, at 1,284,512 to 1,285,027
_RS26420
Position (kb) 1282
1283
1284 Strain fitness (log2 ratio) -1
0
1
2 at 1281.856 kb on - strand at 1281.881 kb on + strand at 1281.948 kb on + strand at 1282.197 kb on - strand, within RR42_RS26405 at 1282.203 kb on + strand, within RR42_RS26405 at 1282.453 kb on - strand, within RR42_RS26405 at 1282.626 kb on + strand at 1282.626 kb on + strand at 1282.651 kb on + strand at 1282.651 kb on + strand at 1282.914 kb on - strand, within RR42_RS26410 at 1282.965 kb on - strand, within RR42_RS26410 at 1283.063 kb on + strand, within RR42_RS26410 at 1283.163 kb on - strand, within RR42_RS26410 at 1283.163 kb on - strand, within RR42_RS26410 at 1283.163 kb on - strand, within RR42_RS26410 at 1283.304 kb on - strand, within RR42_RS26410 at 1283.771 kb on + strand at 1284.440 kb on - strand at 1284.699 kb on + strand, within RR42_RS26420 at 1284.748 kb on - strand, within RR42_RS26420
Per-strain Table
Position Strand Gene LocusTag Fraction Suberic (C) remove 1,281,856 - -0.6 1,281,881 + +0.9 1,281,948 + -0.2 1,282,197 - RR42_RS26405 0.35 +0.2 1,282,203 + RR42_RS26405 0.36 +2.4 1,282,453 - RR42_RS26405 0.71 -1.1 1,282,626 + -0.5 1,282,626 + -0.8 1,282,651 + -1.2 1,282,651 + +0.6 1,282,914 - RR42_RS26410 0.21 +0.6 1,282,965 - RR42_RS26410 0.25 +0.9 1,283,063 + RR42_RS26410 0.34 +0.7 1,283,163 - RR42_RS26410 0.42 -0.9 1,283,163 - RR42_RS26410 0.42 +0.6 1,283,163 - RR42_RS26410 0.42 +2.0 1,283,304 - RR42_RS26410 0.54 -0.2 1,283,771 + +1.0 1,284,440 - -0.5 1,284,699 + RR42_RS26420 0.36 -0.2 1,284,748 - RR42_RS26420 0.46 -1.2
Or see this region's nucleotide sequence