Experiment: Suberic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25470 and RR42_RS25475 overlap by 4 nucleotides RR42_RS25475 and RR42_RS25480 are separated by 11 nucleotides RR42_RS25480 and RR42_RS25485 are separated by 16 nucleotides RR42_RS25485 and RR42_RS25490 are separated by 30 nucleotides
RR42_RS25470: RR42_RS25470 - alpha/beta hydrolase, at 1,061,322 to 1,062,113
_RS25470
RR42_RS25475: RR42_RS25475 - peptidase S15, at 1,062,110 to 1,063,024
_RS25475
RR42_RS25480: RR42_RS25480 - enoyl-CoA hydratase, at 1,063,036 to 1,063,845
_RS25480
RR42_RS25485: RR42_RS25485 - hypothetical protein, at 1,063,862 to 1,064,335
_RS25485
RR42_RS25490: RR42_RS25490 - ABC transporter substrate-binding protein, at 1,064,366 to 1,065,352
_RS25490
Position (kb) 1063
1064 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1062.042 kb on + strand at 1062.047 kb on - strand at 1062.103 kb on - strand at 1062.113 kb on + strand at 1062.113 kb on + strand at 1062.145 kb on - strand at 1062.351 kb on + strand, within RR42_RS25475 at 1062.351 kb on + strand, within RR42_RS25475 at 1062.351 kb on + strand, within RR42_RS25475 at 1062.351 kb on + strand, within RR42_RS25475 at 1062.352 kb on - strand, within RR42_RS25475 at 1062.457 kb on - strand, within RR42_RS25475 at 1062.632 kb on + strand, within RR42_RS25475 at 1062.684 kb on + strand, within RR42_RS25475 at 1062.685 kb on - strand, within RR42_RS25475 at 1062.742 kb on - strand, within RR42_RS25475 at 1062.894 kb on + strand, within RR42_RS25475 at 1062.894 kb on + strand, within RR42_RS25475 at 1063.005 kb on + strand at 1063.005 kb on + strand at 1063.005 kb on + strand at 1063.006 kb on - strand at 1063.006 kb on - strand at 1063.402 kb on + strand, within RR42_RS25480 at 1063.444 kb on - strand, within RR42_RS25480 at 1063.515 kb on - strand, within RR42_RS25480 at 1063.739 kb on + strand, within RR42_RS25480 at 1063.740 kb on - strand, within RR42_RS25480 at 1063.894 kb on + strand at 1064.066 kb on + strand, within RR42_RS25485 at 1064.067 kb on - strand, within RR42_RS25485 at 1064.074 kb on + strand, within RR42_RS25485 at 1064.075 kb on - strand, within RR42_RS25485 at 1064.082 kb on + strand, within RR42_RS25485 at 1064.196 kb on + strand, within RR42_RS25485 at 1064.196 kb on + strand, within RR42_RS25485 at 1064.259 kb on + strand, within RR42_RS25485 at 1064.259 kb on + strand, within RR42_RS25485 at 1064.259 kb on + strand, within RR42_RS25485 at 1064.259 kb on + strand, within RR42_RS25485 at 1064.260 kb on - strand, within RR42_RS25485 at 1064.260 kb on - strand, within RR42_RS25485 at 1064.260 kb on - strand, within RR42_RS25485 at 1064.278 kb on + strand, within RR42_RS25485 at 1064.394 kb on - strand at 1064.428 kb on - strand at 1064.458 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Suberic (C) remove 1,062,042 + +0.5 1,062,047 - +0.3 1,062,103 - +0.8 1,062,113 + +0.1 1,062,113 + -0.3 1,062,145 - -0.1 1,062,351 + RR42_RS25475 0.26 +0.6 1,062,351 + RR42_RS25475 0.26 -1.2 1,062,351 + RR42_RS25475 0.26 -1.6 1,062,351 + RR42_RS25475 0.26 -0.1 1,062,352 - RR42_RS25475 0.26 +0.3 1,062,457 - RR42_RS25475 0.38 +0.6 1,062,632 + RR42_RS25475 0.57 -1.0 1,062,684 + RR42_RS25475 0.63 +0.0 1,062,685 - RR42_RS25475 0.63 +1.3 1,062,742 - RR42_RS25475 0.69 -0.8 1,062,894 + RR42_RS25475 0.86 +1.1 1,062,894 + RR42_RS25475 0.86 +0.3 1,063,005 + -0.6 1,063,005 + +0.5 1,063,005 + +0.9 1,063,006 - +2.5 1,063,006 - +0.7 1,063,402 + RR42_RS25480 0.45 -1.1 1,063,444 - RR42_RS25480 0.50 -0.5 1,063,515 - RR42_RS25480 0.59 -0.8 1,063,739 + RR42_RS25480 0.87 -1.8 1,063,740 - RR42_RS25480 0.87 +0.1 1,063,894 + +0.4 1,064,066 + RR42_RS25485 0.43 -1.1 1,064,067 - RR42_RS25485 0.43 +0.4 1,064,074 + RR42_RS25485 0.45 +1.5 1,064,075 - RR42_RS25485 0.45 -0.2 1,064,082 + RR42_RS25485 0.46 -0.1 1,064,196 + RR42_RS25485 0.70 +0.4 1,064,196 + RR42_RS25485 0.70 +0.8 1,064,259 + RR42_RS25485 0.84 -0.1 1,064,259 + RR42_RS25485 0.84 -0.5 1,064,259 + RR42_RS25485 0.84 +1.1 1,064,259 + RR42_RS25485 0.84 -1.5 1,064,260 - RR42_RS25485 0.84 +1.9 1,064,260 - RR42_RS25485 0.84 +0.2 1,064,260 - RR42_RS25485 0.84 +1.5 1,064,278 + RR42_RS25485 0.88 +0.5 1,064,394 - +1.0 1,064,428 - +0.5 1,064,458 - -0.1
Or see this region's nucleotide sequence