Experiment: Suberic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24620 and RR42_RS24625 are separated by 38 nucleotides RR42_RS24625 and RR42_RS24630 are separated by 35 nucleotides
RR42_RS24620: RR42_RS24620 - amine oxidase, at 860,256 to 861,752
_RS24620
RR42_RS24625: RR42_RS24625 - hypothetical protein, at 861,791 to 862,432
_RS24625
RR42_RS24630: RR42_RS24630 - amine oxidase, at 862,468 to 863,964
_RS24630
Position (kb) 861
862
863 Strain fitness (log2 ratio) -2
-1
0
1
2 at 860.909 kb on + strand, within RR42_RS24620 at 860.926 kb on + strand, within RR42_RS24620 at 860.940 kb on + strand, within RR42_RS24620 at 860.940 kb on + strand, within RR42_RS24620 at 860.941 kb on - strand, within RR42_RS24620 at 861.264 kb on + strand, within RR42_RS24620 at 861.265 kb on - strand, within RR42_RS24620 at 861.294 kb on + strand, within RR42_RS24620 at 861.294 kb on + strand, within RR42_RS24620 at 861.295 kb on - strand, within RR42_RS24620 at 861.477 kb on + strand, within RR42_RS24620 at 861.477 kb on + strand, within RR42_RS24620 at 861.477 kb on + strand, within RR42_RS24620 at 861.478 kb on - strand, within RR42_RS24620 at 861.478 kb on - strand, within RR42_RS24620 at 861.478 kb on - strand, within RR42_RS24620 at 861.478 kb on - strand, within RR42_RS24620 at 861.600 kb on + strand, within RR42_RS24620 at 861.648 kb on - strand at 861.672 kb on - strand at 861.691 kb on + strand at 861.691 kb on + strand at 861.849 kb on - strand at 861.864 kb on - strand, within RR42_RS24625 at 861.971 kb on + strand, within RR42_RS24625 at 861.972 kb on - strand, within RR42_RS24625 at 862.028 kb on + strand, within RR42_RS24625 at 862.029 kb on - strand, within RR42_RS24625 at 862.271 kb on + strand, within RR42_RS24625 at 862.369 kb on - strand at 862.476 kb on + strand at 862.774 kb on + strand, within RR42_RS24630 at 862.868 kb on - strand, within RR42_RS24630 at 862.931 kb on + strand, within RR42_RS24630 at 862.932 kb on - strand, within RR42_RS24630 at 863.138 kb on + strand, within RR42_RS24630 at 863.152 kb on + strand, within RR42_RS24630
Per-strain Table
Position Strand Gene LocusTag Fraction Suberic (C) remove 860,909 + RR42_RS24620 0.44 -1.0 860,926 + RR42_RS24620 0.45 -1.3 860,940 + RR42_RS24620 0.46 +0.7 860,940 + RR42_RS24620 0.46 -0.6 860,941 - RR42_RS24620 0.46 -1.0 861,264 + RR42_RS24620 0.67 -1.4 861,265 - RR42_RS24620 0.67 +0.0 861,294 + RR42_RS24620 0.69 +0.3 861,294 + RR42_RS24620 0.69 -1.9 861,295 - RR42_RS24620 0.69 -0.0 861,477 + RR42_RS24620 0.82 +0.4 861,477 + RR42_RS24620 0.82 -0.3 861,477 + RR42_RS24620 0.82 -0.1 861,478 - RR42_RS24620 0.82 -0.6 861,478 - RR42_RS24620 0.82 +2.1 861,478 - RR42_RS24620 0.82 +1.4 861,478 - RR42_RS24620 0.82 -0.4 861,600 + RR42_RS24620 0.90 -0.9 861,648 - +0.6 861,672 - +1.6 861,691 + +0.7 861,691 + -0.2 861,849 - -0.1 861,864 - RR42_RS24625 0.11 -2.3 861,971 + RR42_RS24625 0.28 -0.7 861,972 - RR42_RS24625 0.28 -0.5 862,028 + RR42_RS24625 0.37 +0.7 862,029 - RR42_RS24625 0.37 -0.2 862,271 + RR42_RS24625 0.75 -0.7 862,369 - -0.1 862,476 + +0.8 862,774 + RR42_RS24630 0.20 -0.5 862,868 - RR42_RS24630 0.27 -1.3 862,931 + RR42_RS24630 0.31 -1.6 862,932 - RR42_RS24630 0.31 -0.2 863,138 + RR42_RS24630 0.45 +0.1 863,152 + RR42_RS24630 0.46 +0.2
Or see this region's nucleotide sequence