Experiment: Suberic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24300 and RR42_RS24305 are separated by 18 nucleotides RR42_RS24305 and RR42_RS24310 are separated by 753 nucleotides
RR42_RS24300: RR42_RS24300 - acetyl-CoA acetyltransferase, at 779,910 to 781,097
_RS24300
RR42_RS24305: RR42_RS24305 - 3-hydroxybutyryl-CoA dehydrogenase, at 781,116 to 781,967
_RS24305
RR42_RS24310: RR42_RS24310 - dehydratase, at 782,721 to 783,230
_RS24310
Position (kb) 781
782 Strain fitness (log2 ratio) -2
-1
0
1
2 at 780.285 kb on + strand, within RR42_RS24300 at 780.286 kb on + strand, within RR42_RS24300 at 780.286 kb on - strand, within RR42_RS24300 at 780.286 kb on - strand, within RR42_RS24300 at 780.286 kb on - strand, within RR42_RS24300 at 780.293 kb on - strand, within RR42_RS24300 at 780.342 kb on + strand, within RR42_RS24300 at 780.343 kb on - strand, within RR42_RS24300 at 780.344 kb on + strand, within RR42_RS24300 at 780.344 kb on + strand, within RR42_RS24300 at 780.344 kb on + strand, within RR42_RS24300 at 780.344 kb on + strand, within RR42_RS24300 at 780.345 kb on - strand, within RR42_RS24300 at 780.345 kb on - strand, within RR42_RS24300 at 780.345 kb on - strand, within RR42_RS24300 at 780.345 kb on - strand, within RR42_RS24300 at 780.345 kb on - strand, within RR42_RS24300 at 780.345 kb on - strand, within RR42_RS24300 at 780.403 kb on - strand, within RR42_RS24300 at 780.403 kb on - strand, within RR42_RS24300 at 780.403 kb on - strand, within RR42_RS24300 at 780.501 kb on - strand, within RR42_RS24300 at 780.547 kb on + strand, within RR42_RS24300 at 780.547 kb on + strand, within RR42_RS24300 at 780.548 kb on - strand, within RR42_RS24300 at 780.548 kb on - strand, within RR42_RS24300 at 780.548 kb on - strand, within RR42_RS24300 at 780.548 kb on - strand, within RR42_RS24300 at 780.548 kb on - strand, within RR42_RS24300 at 780.640 kb on + strand, within RR42_RS24300 at 780.685 kb on + strand, within RR42_RS24300 at 780.686 kb on - strand, within RR42_RS24300 at 780.686 kb on - strand, within RR42_RS24300 at 780.686 kb on - strand, within RR42_RS24300 at 780.688 kb on + strand, within RR42_RS24300 at 780.688 kb on + strand, within RR42_RS24300 at 780.689 kb on - strand, within RR42_RS24300 at 780.838 kb on + strand, within RR42_RS24300 at 780.838 kb on + strand, within RR42_RS24300 at 780.838 kb on + strand, within RR42_RS24300 at 780.853 kb on + strand, within RR42_RS24300 at 780.853 kb on + strand, within RR42_RS24300 at 780.853 kb on + strand, within RR42_RS24300 at 780.854 kb on - strand, within RR42_RS24300 at 780.888 kb on + strand, within RR42_RS24300 at 780.888 kb on + strand, within RR42_RS24300 at 780.889 kb on - strand, within RR42_RS24300 at 780.889 kb on - strand, within RR42_RS24300 at 780.928 kb on + strand, within RR42_RS24300 at 780.929 kb on - strand, within RR42_RS24300 at 781.005 kb on + strand at 781.006 kb on - strand at 781.006 kb on - strand at 781.006 kb on - strand at 781.006 kb on - strand at 781.006 kb on - strand at 781.006 kb on - strand at 781.021 kb on + strand at 781.022 kb on - strand at 781.070 kb on + strand at 781.070 kb on + strand at 781.122 kb on - strand at 781.130 kb on + strand at 781.130 kb on + strand at 781.131 kb on - strand at 781.131 kb on - strand at 781.166 kb on + strand at 781.167 kb on - strand at 781.231 kb on + strand, within RR42_RS24305 at 781.259 kb on + strand, within RR42_RS24305 at 781.259 kb on + strand, within RR42_RS24305 at 781.278 kb on - strand, within RR42_RS24305 at 781.335 kb on - strand, within RR42_RS24305 at 781.335 kb on - strand, within RR42_RS24305 at 781.335 kb on - strand, within RR42_RS24305 at 781.344 kb on + strand, within RR42_RS24305 at 781.346 kb on + strand, within RR42_RS24305 at 781.346 kb on + strand, within RR42_RS24305 at 781.347 kb on - strand, within RR42_RS24305 at 781.347 kb on - strand, within RR42_RS24305 at 781.347 kb on - strand, within RR42_RS24305 at 781.439 kb on - strand, within RR42_RS24305 at 781.439 kb on - strand, within RR42_RS24305 at 781.456 kb on + strand, within RR42_RS24305 at 781.651 kb on + strand, within RR42_RS24305 at 781.688 kb on + strand, within RR42_RS24305 at 781.689 kb on - strand, within RR42_RS24305 at 781.689 kb on - strand, within RR42_RS24305 at 781.706 kb on + strand, within RR42_RS24305 at 781.707 kb on - strand, within RR42_RS24305 at 781.830 kb on - strand, within RR42_RS24305 at 781.858 kb on - strand, within RR42_RS24305 at 781.900 kb on + strand at 781.900 kb on + strand at 781.901 kb on - strand at 781.901 kb on - strand at 781.901 kb on - strand at 781.934 kb on + strand at 781.935 kb on - strand at 781.935 kb on - strand at 781.935 kb on - strand at 781.953 kb on + strand at 781.953 kb on + strand at 781.953 kb on + strand at 781.953 kb on + strand at 781.953 kb on + strand at 781.954 kb on - strand at 781.954 kb on - strand at 781.954 kb on - strand at 781.959 kb on + strand at 781.959 kb on + strand at 781.959 kb on + strand at 781.959 kb on + strand at 781.978 kb on + strand at 781.978 kb on + strand at 781.992 kb on + strand at 781.993 kb on - strand at 782.057 kb on + strand at 782.057 kb on + strand at 782.057 kb on + strand at 782.058 kb on - strand at 782.076 kb on + strand at 782.076 kb on + strand at 782.076 kb on + strand at 782.076 kb on + strand at 782.076 kb on + strand at 782.077 kb on - strand at 782.077 kb on - strand at 782.077 kb on - strand at 782.100 kb on + strand at 782.100 kb on + strand at 782.101 kb on - strand at 782.101 kb on - strand at 782.104 kb on + strand at 782.104 kb on + strand at 782.104 kb on + strand at 782.104 kb on + strand at 782.104 kb on + strand at 782.105 kb on - strand at 782.105 kb on - strand at 782.105 kb on - strand at 782.105 kb on - strand at 782.115 kb on + strand at 782.116 kb on - strand at 782.116 kb on - strand at 782.116 kb on - strand at 782.176 kb on + strand at 782.182 kb on + strand at 782.182 kb on + strand at 782.182 kb on + strand at 782.204 kb on + strand at 782.204 kb on + strand at 782.347 kb on + strand at 782.449 kb on + strand at 782.449 kb on + strand at 782.450 kb on - strand at 782.462 kb on + strand at 782.462 kb on + strand at 782.463 kb on - strand at 782.463 kb on - strand at 782.463 kb on - strand at 782.512 kb on + strand at 782.512 kb on + strand at 782.512 kb on + strand at 782.512 kb on + strand at 782.513 kb on - strand at 782.513 kb on - strand at 782.513 kb on - strand at 782.565 kb on + strand at 782.567 kb on + strand at 782.568 kb on - strand at 782.625 kb on + strand at 782.625 kb on + strand at 782.625 kb on + strand at 782.625 kb on + strand at 782.625 kb on + strand at 782.625 kb on + strand at 782.625 kb on + strand at 782.625 kb on + strand at 782.625 kb on + strand at 782.625 kb on + strand at 782.625 kb on + strand at 782.626 kb on - strand at 782.626 kb on - strand at 782.626 kb on - strand at 782.626 kb on - strand at 782.626 kb on - strand at 782.629 kb on + strand at 782.629 kb on + strand at 782.630 kb on - strand at 782.630 kb on - strand at 782.630 kb on - strand at 782.630 kb on - strand at 782.630 kb on - strand at 782.632 kb on + strand at 782.632 kb on + strand at 782.632 kb on + strand at 782.632 kb on + strand at 782.632 kb on + strand at 782.633 kb on - strand at 782.633 kb on - strand at 782.633 kb on - strand at 782.633 kb on - strand at 782.652 kb on + strand at 782.653 kb on - strand at 782.653 kb on - strand at 782.653 kb on - strand at 782.661 kb on + strand at 782.661 kb on + strand at 782.701 kb on + strand at 782.766 kb on + strand at 782.844 kb on - strand, within RR42_RS24310 at 782.863 kb on + strand, within RR42_RS24310 at 782.871 kb on - strand, within RR42_RS24310 at 782.896 kb on - strand, within RR42_RS24310 at 782.896 kb on - strand, within RR42_RS24310 at 782.937 kb on + strand, within RR42_RS24310 at 782.938 kb on - strand, within RR42_RS24310 at 782.938 kb on - strand, within RR42_RS24310 at 782.944 kb on + strand, within RR42_RS24310 at 782.944 kb on + strand, within RR42_RS24310 at 782.945 kb on - strand, within RR42_RS24310 at 782.945 kb on - strand, within RR42_RS24310
Per-strain Table
Position Strand Gene LocusTag Fraction Suberic (C) remove 780,285 + RR42_RS24300 0.32 +0.8 780,286 + RR42_RS24300 0.32 +2.0 780,286 - RR42_RS24300 0.32 +0.1 780,286 - RR42_RS24300 0.32 +1.6 780,286 - RR42_RS24300 0.32 -0.4 780,293 - RR42_RS24300 0.32 -0.8 780,342 + RR42_RS24300 0.36 +0.6 780,343 - RR42_RS24300 0.36 +0.7 780,344 + RR42_RS24300 0.37 +1.6 780,344 + RR42_RS24300 0.37 +0.1 780,344 + RR42_RS24300 0.37 -0.9 780,344 + RR42_RS24300 0.37 +2.6 780,345 - RR42_RS24300 0.37 +0.9 780,345 - RR42_RS24300 0.37 -1.4 780,345 - RR42_RS24300 0.37 +1.8 780,345 - RR42_RS24300 0.37 +1.4 780,345 - RR42_RS24300 0.37 -0.2 780,345 - RR42_RS24300 0.37 +1.6 780,403 - RR42_RS24300 0.41 -2.5 780,403 - RR42_RS24300 0.41 +0.3 780,403 - RR42_RS24300 0.41 -1.4 780,501 - RR42_RS24300 0.50 -0.4 780,547 + RR42_RS24300 0.54 -1.3 780,547 + RR42_RS24300 0.54 -0.0 780,548 - RR42_RS24300 0.54 +0.2 780,548 - RR42_RS24300 0.54 +1.2 780,548 - RR42_RS24300 0.54 -1.0 780,548 - RR42_RS24300 0.54 +0.5 780,548 - RR42_RS24300 0.54 -0.6 780,640 + RR42_RS24300 0.61 -2.6 780,685 + RR42_RS24300 0.65 -0.1 780,686 - RR42_RS24300 0.65 +1.9 780,686 - RR42_RS24300 0.65 -0.5 780,686 - RR42_RS24300 0.65 -0.1 780,688 + RR42_RS24300 0.65 +0.1 780,688 + RR42_RS24300 0.65 -0.4 780,689 - RR42_RS24300 0.66 +0.9 780,838 + RR42_RS24300 0.78 +0.1 780,838 + RR42_RS24300 0.78 -1.3 780,838 + RR42_RS24300 0.78 +0.6 780,853 + RR42_RS24300 0.79 -0.0 780,853 + RR42_RS24300 0.79 +0.6 780,853 + RR42_RS24300 0.79 -0.9 780,854 - RR42_RS24300 0.79 +0.3 780,888 + RR42_RS24300 0.82 +0.1 780,888 + RR42_RS24300 0.82 -1.4 780,889 - RR42_RS24300 0.82 -0.6 780,889 - RR42_RS24300 0.82 -1.4 780,928 + RR42_RS24300 0.86 -0.6 780,929 - RR42_RS24300 0.86 +1.6 781,005 + +0.0 781,006 - +0.4 781,006 - +1.0 781,006 - -0.2 781,006 - -0.7 781,006 - +0.8 781,006 - +0.5 781,021 + +0.5 781,022 - -0.2 781,070 + -0.1 781,070 + +0.5 781,122 - -1.2 781,130 + +0.4 781,130 + -0.7 781,131 - -1.4 781,131 - -0.7 781,166 + -0.4 781,167 - +0.9 781,231 + RR42_RS24305 0.13 +0.8 781,259 + RR42_RS24305 0.17 +0.1 781,259 + RR42_RS24305 0.17 +0.2 781,278 - RR42_RS24305 0.19 -0.1 781,335 - RR42_RS24305 0.26 -0.4 781,335 - RR42_RS24305 0.26 +1.2 781,335 - RR42_RS24305 0.26 +0.2 781,344 + RR42_RS24305 0.27 +0.2 781,346 + RR42_RS24305 0.27 -0.3 781,346 + RR42_RS24305 0.27 -0.4 781,347 - RR42_RS24305 0.27 +1.7 781,347 - RR42_RS24305 0.27 +0.0 781,347 - RR42_RS24305 0.27 +1.3 781,439 - RR42_RS24305 0.38 +2.6 781,439 - RR42_RS24305 0.38 +1.0 781,456 + RR42_RS24305 0.40 -0.1 781,651 + RR42_RS24305 0.63 +0.9 781,688 + RR42_RS24305 0.67 +0.3 781,689 - RR42_RS24305 0.67 +1.2 781,689 - RR42_RS24305 0.67 +0.3 781,706 + RR42_RS24305 0.69 -0.1 781,707 - RR42_RS24305 0.69 -0.2 781,830 - RR42_RS24305 0.84 +1.0 781,858 - RR42_RS24305 0.87 +1.8 781,900 + -1.7 781,900 + +0.6 781,901 - -1.7 781,901 - +0.8 781,901 - -1.1 781,934 + +2.2 781,935 - +0.7 781,935 - +0.1 781,935 - -0.1 781,953 + +0.9 781,953 + -0.0 781,953 + +2.3 781,953 + -2.6 781,953 + +0.3 781,954 - -0.6 781,954 - -0.0 781,954 - -0.6 781,959 + +1.0 781,959 + -0.0 781,959 + -0.1 781,959 + +1.9 781,978 + -0.6 781,978 + +0.7 781,992 + -0.0 781,993 - +0.5 782,057 + -0.3 782,057 + -0.1 782,057 + +0.7 782,058 - -0.4 782,076 + -0.7 782,076 + +0.3 782,076 + -0.0 782,076 + -0.2 782,076 + +2.0 782,077 - +0.6 782,077 - -0.8 782,077 - +0.6 782,100 + -0.2 782,100 + +0.4 782,101 - +1.5 782,101 - +0.1 782,104 + +0.2 782,104 + -1.2 782,104 + +1.6 782,104 + +1.6 782,104 + -0.8 782,105 - -1.7 782,105 - +1.6 782,105 - +0.7 782,105 - +0.4 782,115 + +1.0 782,116 - -0.4 782,116 - -0.6 782,116 - -0.1 782,176 + +1.0 782,182 + +0.3 782,182 + -0.6 782,182 + +0.0 782,204 + +1.0 782,204 + -1.9 782,347 + -1.6 782,449 + -2.3 782,449 + +1.4 782,450 - -1.1 782,462 + +1.8 782,462 + -0.4 782,463 - +1.1 782,463 - -0.5 782,463 - +1.6 782,512 + -1.4 782,512 + -0.7 782,512 + -0.5 782,512 + -1.2 782,513 - -2.1 782,513 - +2.6 782,513 - -0.0 782,565 + -0.4 782,567 + -0.9 782,568 - +0.6 782,625 + +0.1 782,625 + -1.0 782,625 + -0.8 782,625 + -0.4 782,625 + -0.4 782,625 + -0.4 782,625 + +0.0 782,625 + +0.7 782,625 + -0.1 782,625 + -2.4 782,625 + +0.1 782,626 - +0.4 782,626 - -0.1 782,626 - +0.8 782,626 - -0.2 782,626 - -0.5 782,629 + +0.4 782,629 + +0.8 782,630 - -1.1 782,630 - -0.6 782,630 - -1.5 782,630 - +0.9 782,630 - -0.0 782,632 + -1.1 782,632 + +0.2 782,632 + +0.4 782,632 + +1.0 782,632 + +0.4 782,633 - +0.5 782,633 - -0.3 782,633 - -1.0 782,633 - -0.3 782,652 + +0.8 782,653 - +0.9 782,653 - -0.4 782,653 - -0.2 782,661 + -0.6 782,661 + +0.1 782,701 + -0.2 782,766 + -0.1 782,844 - RR42_RS24310 0.24 +2.0 782,863 + RR42_RS24310 0.28 +0.2 782,871 - RR42_RS24310 0.29 -1.2 782,896 - RR42_RS24310 0.34 +0.3 782,896 - RR42_RS24310 0.34 -0.4 782,937 + RR42_RS24310 0.42 -0.5 782,938 - RR42_RS24310 0.43 -1.2 782,938 - RR42_RS24310 0.43 +0.6 782,944 + RR42_RS24310 0.44 -0.0 782,944 + RR42_RS24310 0.44 -0.9 782,945 - RR42_RS24310 0.44 -1.3 782,945 - RR42_RS24310 0.44 +0.6
Or see this region's nucleotide sequence