Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06820

Experiment: Suberic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS06810 and RR42_RS06815 are separated by 204 nucleotidesRR42_RS06815 and RR42_RS06820 overlap by 1 nucleotidesRR42_RS06820 and RR42_RS06825 are separated by 224 nucleotides RR42_RS06810: RR42_RS06810 - hypothetical protein, at 1,474,365 to 1,474,643 _RS06810 RR42_RS06815: RR42_RS06815 - hypothetical protein, at 1,474,848 to 1,475,423 _RS06815 RR42_RS06820: RR42_RS06820 - hypothetical protein, at 1,475,423 to 1,475,674 _RS06820 RR42_RS06825: RR42_RS06825 - hypothetical protein, at 1,475,899 to 1,476,567 _RS06825 Position (kb) 1475 1476Strain fitness (log2 ratio) -2 -1 0 1at 1474.518 kb on + strand, within RR42_RS06810at 1474.628 kb on - strandat 1474.628 kb on - strandat 1474.660 kb on - strandat 1474.724 kb on - strandat 1474.733 kb on + strandat 1474.908 kb on + strand, within RR42_RS06815at 1474.993 kb on - strand, within RR42_RS06815at 1475.063 kb on + strand, within RR42_RS06815at 1475.063 kb on + strand, within RR42_RS06815at 1475.063 kb on + strand, within RR42_RS06815at 1475.296 kb on + strand, within RR42_RS06815at 1475.296 kb on + strand, within RR42_RS06815at 1475.296 kb on + strand, within RR42_RS06815at 1475.296 kb on + strand, within RR42_RS06815at 1475.296 kb on + strand, within RR42_RS06815at 1475.322 kb on + strand, within RR42_RS06815at 1475.463 kb on + strand, within RR42_RS06820at 1475.466 kb on + strand, within RR42_RS06820at 1475.466 kb on + strand, within RR42_RS06820at 1475.466 kb on + strand, within RR42_RS06820at 1475.466 kb on + strand, within RR42_RS06820at 1475.467 kb on - strand, within RR42_RS06820at 1475.569 kb on - strand, within RR42_RS06820at 1475.754 kb on + strandat 1475.755 kb on - strandat 1475.881 kb on - strandat 1475.898 kb on + strandat 1475.898 kb on + strandat 1475.899 kb on - strandat 1475.950 kb on + strandat 1475.982 kb on + strand, within RR42_RS06825at 1475.983 kb on - strand, within RR42_RS06825at 1475.983 kb on - strand, within RR42_RS06825at 1476.045 kb on - strand, within RR42_RS06825at 1476.045 kb on - strand, within RR42_RS06825at 1476.054 kb on + strand, within RR42_RS06825at 1476.103 kb on - strand, within RR42_RS06825at 1476.103 kb on - strand, within RR42_RS06825at 1476.230 kb on - strand, within RR42_RS06825at 1476.230 kb on - strand, within RR42_RS06825at 1476.230 kb on - strand, within RR42_RS06825at 1476.230 kb on - strand, within RR42_RS06825at 1476.230 kb on - strand, within RR42_RS06825at 1476.454 kb on + strand, within RR42_RS06825at 1476.454 kb on + strand, within RR42_RS06825at 1476.454 kb on + strand, within RR42_RS06825at 1476.454 kb on + strand, within RR42_RS06825at 1476.484 kb on - strand, within RR42_RS06825at 1476.547 kb on + strandat 1476.607 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Suberic (C)
remove
1,474,518 + RR42_RS06810 0.55 -0.7
1,474,628 - -1.0
1,474,628 - -0.2
1,474,660 - -1.4
1,474,724 - +1.3
1,474,733 + -0.6
1,474,908 + RR42_RS06815 0.10 +1.3
1,474,993 - RR42_RS06815 0.25 +1.2
1,475,063 + RR42_RS06815 0.37 +0.1
1,475,063 + RR42_RS06815 0.37 +0.9
1,475,063 + RR42_RS06815 0.37 -0.4
1,475,296 + RR42_RS06815 0.78 -0.1
1,475,296 + RR42_RS06815 0.78 +0.7
1,475,296 + RR42_RS06815 0.78 +0.2
1,475,296 + RR42_RS06815 0.78 +0.3
1,475,296 + RR42_RS06815 0.78 +0.3
1,475,322 + RR42_RS06815 0.82 +0.3
1,475,463 + RR42_RS06820 0.16 -0.9
1,475,466 + RR42_RS06820 0.17 -1.8
1,475,466 + RR42_RS06820 0.17 +0.9
1,475,466 + RR42_RS06820 0.17 +0.0
1,475,466 + RR42_RS06820 0.17 -0.8
1,475,467 - RR42_RS06820 0.17 -0.4
1,475,569 - RR42_RS06820 0.58 -1.0
1,475,754 + -1.3
1,475,755 - -0.3
1,475,881 - +0.1
1,475,898 + +1.2
1,475,898 + +1.3
1,475,899 - -0.3
1,475,950 + -1.3
1,475,982 + RR42_RS06825 0.12 +0.8
1,475,983 - RR42_RS06825 0.13 +0.5
1,475,983 - RR42_RS06825 0.13 -0.5
1,476,045 - RR42_RS06825 0.22 -2.5
1,476,045 - RR42_RS06825 0.22 +1.2
1,476,054 + RR42_RS06825 0.23 -1.3
1,476,103 - RR42_RS06825 0.30 -0.6
1,476,103 - RR42_RS06825 0.30 +0.2
1,476,230 - RR42_RS06825 0.49 +1.5
1,476,230 - RR42_RS06825 0.49 +1.0
1,476,230 - RR42_RS06825 0.49 +0.7
1,476,230 - RR42_RS06825 0.49 +0.3
1,476,230 - RR42_RS06825 0.49 -0.2
1,476,454 + RR42_RS06825 0.83 +0.4
1,476,454 + RR42_RS06825 0.83 +0.6
1,476,454 + RR42_RS06825 0.83 -1.6
1,476,454 + RR42_RS06825 0.83 +1.3
1,476,484 - RR42_RS06825 0.87 +1.7
1,476,547 + +0.4
1,476,607 + -0.8

Or see this region's nucleotide sequence