Experiment: Suberic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04005 and RR42_RS04010 are separated by 36 nucleotides RR42_RS04010 and RR42_RS04015 overlap by 14 nucleotides RR42_RS04015 and RR42_RS04020 are separated by 239 nucleotides
RR42_RS04005: RR42_RS04005 - carbon monoxide dehydrogenase, at 887,824 to 890,067
_RS04005
RR42_RS04010: RR42_RS04010 - transcriptional regulator, at 890,104 to 890,985
_RS04010
RR42_RS04015: RR42_RS04015 - RNA polymerase sigma factor, at 890,972 to 891,670
_RS04015
RR42_RS04020: RR42_RS04020 - serine/threonine protein phosphatase, at 891,910 to 892,791
_RS04020
Position (kb) 890
891 Strain fitness (log2 ratio) -2
-1
0
1
2 at 889.108 kb on + strand, within RR42_RS04005 at 889.211 kb on - strand, within RR42_RS04005 at 889.284 kb on + strand, within RR42_RS04005 at 889.284 kb on + strand, within RR42_RS04005 at 889.387 kb on + strand, within RR42_RS04005 at 889.387 kb on + strand, within RR42_RS04005 at 889.387 kb on + strand, within RR42_RS04005 at 889.388 kb on - strand, within RR42_RS04005 at 889.406 kb on + strand, within RR42_RS04005 at 889.538 kb on - strand, within RR42_RS04005 at 889.690 kb on + strand, within RR42_RS04005 at 889.691 kb on - strand, within RR42_RS04005 at 889.925 kb on + strand at 889.925 kb on + strand at 890.189 kb on + strand at 890.190 kb on - strand at 890.226 kb on - strand, within RR42_RS04010 at 890.388 kb on - strand, within RR42_RS04010 at 890.388 kb on - strand, within RR42_RS04010 at 890.388 kb on - strand, within RR42_RS04010 at 890.594 kb on + strand, within RR42_RS04010 at 890.595 kb on - strand, within RR42_RS04010 at 890.673 kb on - strand, within RR42_RS04010 at 890.886 kb on + strand, within RR42_RS04010 at 890.886 kb on + strand, within RR42_RS04010 at 890.886 kb on + strand, within RR42_RS04010 at 890.886 kb on + strand, within RR42_RS04010 at 890.887 kb on - strand, within RR42_RS04010 at 890.887 kb on - strand, within RR42_RS04010 at 890.887 kb on - strand, within RR42_RS04010 at 890.887 kb on - strand, within RR42_RS04010 at 890.887 kb on - strand, within RR42_RS04010 at 890.887 kb on - strand, within RR42_RS04010 at 891.409 kb on - strand, within RR42_RS04015 at 891.606 kb on + strand at 891.607 kb on - strand at 891.743 kb on - strand at 891.791 kb on - strand at 891.816 kb on + strand at 891.909 kb on + strand at 891.909 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Suberic (C) remove 889,108 + RR42_RS04005 0.57 +0.3 889,211 - RR42_RS04005 0.62 +0.3 889,284 + RR42_RS04005 0.65 +0.3 889,284 + RR42_RS04005 0.65 -0.4 889,387 + RR42_RS04005 0.70 -1.1 889,387 + RR42_RS04005 0.70 +0.5 889,387 + RR42_RS04005 0.70 +1.8 889,388 - RR42_RS04005 0.70 -0.3 889,406 + RR42_RS04005 0.70 -1.5 889,538 - RR42_RS04005 0.76 +0.5 889,690 + RR42_RS04005 0.83 +1.7 889,691 - RR42_RS04005 0.83 -0.3 889,925 + +1.3 889,925 + +1.2 890,189 + +0.3 890,190 - +0.1 890,226 - RR42_RS04010 0.14 -0.5 890,388 - RR42_RS04010 0.32 +1.0 890,388 - RR42_RS04010 0.32 -1.9 890,388 - RR42_RS04010 0.32 +0.0 890,594 + RR42_RS04010 0.56 -0.1 890,595 - RR42_RS04010 0.56 +0.0 890,673 - RR42_RS04010 0.65 +0.2 890,886 + RR42_RS04010 0.89 -0.3 890,886 + RR42_RS04010 0.89 -0.8 890,886 + RR42_RS04010 0.89 -1.1 890,886 + RR42_RS04010 0.89 -0.0 890,887 - RR42_RS04010 0.89 +0.1 890,887 - RR42_RS04010 0.89 -0.5 890,887 - RR42_RS04010 0.89 -0.5 890,887 - RR42_RS04010 0.89 -2.0 890,887 - RR42_RS04010 0.89 +0.1 890,887 - RR42_RS04010 0.89 +0.2 891,409 - RR42_RS04015 0.63 -0.2 891,606 + +0.8 891,607 - +0.3 891,743 - -0.4 891,791 - -1.5 891,816 + +0.5 891,909 + +0.7 891,909 + -0.1
Or see this region's nucleotide sequence