Experiment: Suberic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02415 and RR42_RS02420 are separated by 98 nucleotides RR42_RS02420 and RR42_RS02425 are separated by 35 nucleotides RR42_RS02425 and RR42_RS02430 are separated by 448 nucleotides
RR42_RS02415: RR42_RS02415 - ubiquinone biosynthesis protein UbiB, at 543,395 to 544,972
_RS02415
RR42_RS02420: RR42_RS02420 - SAM-dependent methyltransferase, at 545,071 to 545,706
_RS02420
RR42_RS02425: RR42_RS02425 - hypothetical protein, at 545,742 to 546,350
_RS02425
RR42_RS02430: RR42_RS02430 - sodium:solute symporter, at 546,799 to 548,235
_RS02430
Position (kb) 545
546
547 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 544.971 kb on - strand at 544.982 kb on + strand at 544.982 kb on + strand at 544.983 kb on - strand at 545.437 kb on + strand, within RR42_RS02420 at 545.661 kb on - strand at 545.704 kb on + strand at 545.776 kb on + strand at 545.777 kb on - strand at 545.967 kb on - strand, within RR42_RS02425 at 546.038 kb on + strand, within RR42_RS02425 at 546.038 kb on + strand, within RR42_RS02425 at 546.039 kb on - strand, within RR42_RS02425 at 546.433 kb on + strand at 546.434 kb on - strand at 546.471 kb on + strand at 546.471 kb on + strand at 546.471 kb on + strand at 546.472 kb on - strand at 546.472 kb on - strand at 546.481 kb on - strand at 546.643 kb on - strand at 546.645 kb on - strand at 546.678 kb on + strand at 546.916 kb on + strand at 546.916 kb on + strand at 546.916 kb on + strand at 546.916 kb on + strand at 546.916 kb on + strand at 546.916 kb on + strand at 546.917 kb on - strand at 546.917 kb on - strand at 546.917 kb on - strand at 546.917 kb on - strand at 546.917 kb on - strand at 546.918 kb on + strand at 546.918 kb on + strand at 547.079 kb on - strand, within RR42_RS02430 at 547.108 kb on + strand, within RR42_RS02430 at 547.111 kb on + strand, within RR42_RS02430
Per-strain Table
Position Strand Gene LocusTag Fraction Suberic (C) remove 544,971 - +0.3 544,982 + -0.0 544,982 + +3.2 544,983 - -0.4 545,437 + RR42_RS02420 0.58 -1.9 545,661 - +1.6 545,704 + +0.2 545,776 + -0.1 545,777 - +0.4 545,967 - RR42_RS02425 0.37 +1.8 546,038 + RR42_RS02425 0.49 -4.3 546,038 + RR42_RS02425 0.49 -0.8 546,039 - RR42_RS02425 0.49 -1.6 546,433 + +0.3 546,434 - +1.1 546,471 + +0.2 546,471 + +0.4 546,471 + -0.3 546,472 - -0.8 546,472 - -0.5 546,481 - -0.4 546,643 - -0.4 546,645 - +1.0 546,678 + -0.0 546,916 + +1.2 546,916 + -0.5 546,916 + +0.4 546,916 + -0.8 546,916 + +1.0 546,916 + +0.6 546,917 - -0.6 546,917 - -1.6 546,917 - +0.4 546,917 - -0.3 546,917 - -2.5 546,918 + -0.4 546,918 + +1.4 547,079 - RR42_RS02430 0.19 -0.2 547,108 + RR42_RS02430 0.22 +0.7 547,111 + RR42_RS02430 0.22 -1.0
Or see this region's nucleotide sequence