Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26375 and BWI76_RS26380 are separated by 117 nucleotides BWI76_RS26380 and BWI76_RS26385 are separated by 31 nucleotides
BWI76_RS26375: BWI76_RS26375 - aspartate aminotransferase family protein, at 5,459,277 to 5,460,542
_RS26375
BWI76_RS26380: BWI76_RS26380 - decarboxylase, at 5,460,660 to 5,462,174
_RS26380
BWI76_RS26385: BWI76_RS26385 - RNA polymerase sigma factor RpoH, at 5,462,206 to 5,463,060
_RS26385
Position (kb) 5460
5461
5462
5463 Strain fitness (log2 ratio) -1
0
1 at 5459.669 kb on - strand, within BWI76_RS26375 at 5459.786 kb on - strand, within BWI76_RS26375 at 5459.788 kb on + strand, within BWI76_RS26375 at 5459.835 kb on + strand, within BWI76_RS26375 at 5460.070 kb on + strand at 5460.104 kb on + strand, within BWI76_RS26375 at 5460.111 kb on + strand, within BWI76_RS26375 at 5460.177 kb on - strand, within BWI76_RS26375 at 5460.338 kb on - strand, within BWI76_RS26375 at 5460.390 kb on - strand, within BWI76_RS26375 at 5460.428 kb on + strand at 5460.451 kb on - strand at 5460.493 kb on - strand at 5460.527 kb on + strand at 5460.766 kb on + strand at 5460.954 kb on + strand, within BWI76_RS26380 at 5461.234 kb on - strand, within BWI76_RS26380 at 5461.245 kb on - strand, within BWI76_RS26380 at 5461.283 kb on - strand, within BWI76_RS26380 at 5461.500 kb on - strand, within BWI76_RS26380 at 5461.615 kb on - strand, within BWI76_RS26380 at 5461.639 kb on - strand, within BWI76_RS26380 at 5461.687 kb on - strand, within BWI76_RS26380 at 5461.819 kb on + strand, within BWI76_RS26380 at 5462.048 kb on + strand at 5462.128 kb on + strand at 5462.212 kb on - strand at 5463.135 kb on - strand at 5463.164 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x remove 5,459,669 - BWI76_RS26375 0.31 +0.5 5,459,786 - BWI76_RS26375 0.40 +0.2 5,459,788 + BWI76_RS26375 0.40 +0.0 5,459,835 + BWI76_RS26375 0.44 +0.6 5,460,070 + -1.2 5,460,104 + BWI76_RS26375 0.65 +0.0 5,460,111 + BWI76_RS26375 0.66 +1.3 5,460,177 - BWI76_RS26375 0.71 +0.2 5,460,338 - BWI76_RS26375 0.84 +0.2 5,460,390 - BWI76_RS26375 0.88 +0.0 5,460,428 + +0.0 5,460,451 - +0.4 5,460,493 - +0.2 5,460,527 + +0.6 5,460,766 + +0.1 5,460,954 + BWI76_RS26380 0.19 +0.9 5,461,234 - BWI76_RS26380 0.38 +1.7 5,461,245 - BWI76_RS26380 0.39 +1.5 5,461,283 - BWI76_RS26380 0.41 +0.3 5,461,500 - BWI76_RS26380 0.55 +0.5 5,461,615 - BWI76_RS26380 0.63 -0.4 5,461,639 - BWI76_RS26380 0.65 +0.9 5,461,687 - BWI76_RS26380 0.68 +0.8 5,461,819 + BWI76_RS26380 0.77 +0.2 5,462,048 + +0.5 5,462,128 + -0.5 5,462,212 - -0.1 5,463,135 - -1.4 5,463,164 - -0.6
Or see this region's nucleotide sequence