Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23170 and BWI76_RS23175 are separated by 11 nucleotides BWI76_RS23175 and BWI76_RS23180 overlap by 4 nucleotides
BWI76_RS23170: BWI76_RS23170 - aldehyde dehydrogenase EutE, at 4,826,966 to 4,828,357
_RS23170
BWI76_RS23175: BWI76_RS23175 - propanediol utilization protein, at 4,828,369 to 4,829,481
_RS23175
BWI76_RS23180: BWI76_RS23180 - NADH dehydrogenase, at 4,829,478 to 4,830,833
_RS23180
Position (kb) 4828
4829
4830 Strain fitness (log2 ratio) -1
0
1
2 at 4827.389 kb on - strand, within BWI76_RS23170 at 4827.415 kb on - strand, within BWI76_RS23170 at 4827.474 kb on + strand, within BWI76_RS23170 at 4827.482 kb on - strand, within BWI76_RS23170 at 4827.688 kb on + strand, within BWI76_RS23170 at 4828.247 kb on + strand at 4828.469 kb on + strand at 4828.491 kb on + strand, within BWI76_RS23175 at 4828.499 kb on - strand, within BWI76_RS23175 at 4828.579 kb on + strand, within BWI76_RS23175 at 4828.739 kb on + strand, within BWI76_RS23175 at 4828.747 kb on - strand, within BWI76_RS23175 at 4828.784 kb on + strand, within BWI76_RS23175 at 4828.825 kb on - strand, within BWI76_RS23175 at 4829.095 kb on + strand, within BWI76_RS23175 at 4829.168 kb on - strand, within BWI76_RS23175 at 4829.449 kb on - strand at 4829.475 kb on + strand at 4829.483 kb on - strand at 4829.648 kb on + strand, within BWI76_RS23180 at 4829.648 kb on + strand, within BWI76_RS23180 at 4829.689 kb on - strand, within BWI76_RS23180 at 4830.148 kb on - strand, within BWI76_RS23180 at 4830.286 kb on + strand, within BWI76_RS23180 at 4830.324 kb on - strand, within BWI76_RS23180 at 4830.393 kb on + strand, within BWI76_RS23180 at 4830.401 kb on - strand, within BWI76_RS23180
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x remove 4,827,389 - BWI76_RS23170 0.30 +0.0 4,827,415 - BWI76_RS23170 0.32 -0.2 4,827,474 + BWI76_RS23170 0.36 -0.0 4,827,482 - BWI76_RS23170 0.37 -0.3 4,827,688 + BWI76_RS23170 0.52 +1.0 4,828,247 + -0.6 4,828,469 + +0.0 4,828,491 + BWI76_RS23175 0.11 +0.6 4,828,499 - BWI76_RS23175 0.12 +0.4 4,828,579 + BWI76_RS23175 0.19 +1.0 4,828,739 + BWI76_RS23175 0.33 +0.1 4,828,747 - BWI76_RS23175 0.34 +2.3 4,828,784 + BWI76_RS23175 0.37 -0.9 4,828,825 - BWI76_RS23175 0.41 +0.3 4,829,095 + BWI76_RS23175 0.65 +0.4 4,829,168 - BWI76_RS23175 0.72 -0.1 4,829,449 - -0.2 4,829,475 + +0.5 4,829,483 - +0.3 4,829,648 + BWI76_RS23180 0.13 +0.3 4,829,648 + BWI76_RS23180 0.13 -1.2 4,829,689 - BWI76_RS23180 0.16 +0.4 4,830,148 - BWI76_RS23180 0.49 -1.0 4,830,286 + BWI76_RS23180 0.60 +0.3 4,830,324 - BWI76_RS23180 0.62 +0.3 4,830,393 + BWI76_RS23180 0.67 +0.1 4,830,401 - BWI76_RS23180 0.68 +0.6
Or see this region's nucleotide sequence