Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07735 and BWI76_RS07740 are separated by 68 nucleotides BWI76_RS07740 and BWI76_RS07745 are separated by 370 nucleotides
BWI76_RS07735: BWI76_RS07735 - MFS transporter, at 1,640,676 to 1,641,917
_RS07735
BWI76_RS07740: BWI76_RS07740 - Fe2+-enterobactin ABC transporter substrate-binding protein, at 1,641,986 to 1,642,945
_RS07740
BWI76_RS07745: BWI76_RS07745 - isochorismate synthase EntC, at 1,643,316 to 1,644,491
_RS07745
Position (kb)
1641
1642
1643 Strain fitness (log2 ratio)
-1
0
1 at 1641.025 kb on + strand, within BWI76_RS07735 at 1641.368 kb on + strand, within BWI76_RS07735 at 1641.376 kb on - strand, within BWI76_RS07735 at 1641.389 kb on + strand, within BWI76_RS07735 at 1641.498 kb on + strand, within BWI76_RS07735 at 1641.587 kb on + strand, within BWI76_RS07735 at 1641.587 kb on + strand, within BWI76_RS07735 at 1641.595 kb on - strand, within BWI76_RS07735 at 1641.860 kb on - strand at 1642.278 kb on - strand, within BWI76_RS07740 at 1642.726 kb on - strand, within BWI76_RS07740 at 1643.195 kb on + strand at 1643.579 kb on + strand, within BWI76_RS07745 at 1643.587 kb on - strand, within BWI76_RS07745 at 1643.596 kb on + strand, within BWI76_RS07745 at 1643.670 kb on - strand, within BWI76_RS07745 at 1643.848 kb on + strand, within BWI76_RS07745 at 1643.848 kb on + strand, within BWI76_RS07745
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x remove 1,641,025 + BWI76_RS07735 0.28 -0.1 1,641,368 + BWI76_RS07735 0.56 -0.8 1,641,376 - BWI76_RS07735 0.56 -1.7 1,641,389 + BWI76_RS07735 0.57 +0.1 1,641,498 + BWI76_RS07735 0.66 +0.4 1,641,587 + BWI76_RS07735 0.73 -0.2 1,641,587 + BWI76_RS07735 0.73 -0.3 1,641,595 - BWI76_RS07735 0.74 -0.1 1,641,860 - -0.5 1,642,278 - BWI76_RS07740 0.30 -0.8 1,642,726 - BWI76_RS07740 0.77 -1.7 1,643,195 + -1.5 1,643,579 + BWI76_RS07745 0.22 -0.5 1,643,587 - BWI76_RS07745 0.23 +0.3 1,643,596 + BWI76_RS07745 0.24 -1.2 1,643,670 - BWI76_RS07745 0.30 +0.4 1,643,848 + BWI76_RS07745 0.45 +0.5 1,643,848 + BWI76_RS07745 0.45 -0.5
Or see this region's nucleotide sequence