Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24630 and RR42_RS24635 are separated by 44 nucleotides RR42_RS24635 and RR42_RS24640 are separated by 34 nucleotides
RR42_RS24630: RR42_RS24630 - amine oxidase, at 862,468 to 863,964
_RS24630
RR42_RS24635: RR42_RS24635 - hypothetical protein, at 864,009 to 864,650
_RS24635
RR42_RS24640: RR42_RS24640 - amine oxidase, at 864,685 to 866,181
_RS24640
Position (kb) 864
865 Strain fitness (log2 ratio) -1
0
1 at 863.138 kb on + strand, within RR42_RS24630 at 863.152 kb on + strand, within RR42_RS24630 at 863.476 kb on + strand, within RR42_RS24630 at 863.506 kb on + strand, within RR42_RS24630 at 863.573 kb on + strand, within RR42_RS24630 at 863.582 kb on - strand, within RR42_RS24630 at 863.642 kb on + strand, within RR42_RS24630 at 863.643 kb on - strand, within RR42_RS24630 at 863.689 kb on + strand, within RR42_RS24630 at 863.731 kb on + strand, within RR42_RS24630 at 863.732 kb on - strand, within RR42_RS24630 at 863.732 kb on - strand, within RR42_RS24630 at 863.887 kb on + strand at 863.888 kb on - strand at 863.970 kb on - strand at 864.037 kb on + strand at 864.038 kb on - strand at 864.066 kb on + strand at 864.082 kb on - strand, within RR42_RS24635 at 864.189 kb on + strand, within RR42_RS24635 at 864.216 kb on + strand, within RR42_RS24635 at 864.217 kb on - strand, within RR42_RS24635 at 864.489 kb on + strand, within RR42_RS24635 at 864.520 kb on - strand, within RR42_RS24635 at 864.615 kb on - strand at 864.634 kb on - strand at 864.634 kb on - strand at 864.671 kb on - strand at 864.671 kb on - strand at 864.694 kb on - strand at 864.757 kb on - strand at 864.963 kb on + strand, within RR42_RS24640 at 865.095 kb on + strand, within RR42_RS24640 at 865.402 kb on + strand, within RR42_RS24640 at 865.402 kb on + strand, within RR42_RS24640 at 865.402 kb on + strand, within RR42_RS24640
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 863,138 + RR42_RS24630 0.45 +0.4 863,152 + RR42_RS24630 0.46 -0.0 863,476 + RR42_RS24630 0.67 -0.5 863,506 + RR42_RS24630 0.69 -0.3 863,573 + RR42_RS24630 0.74 -0.3 863,582 - RR42_RS24630 0.74 -0.2 863,642 + RR42_RS24630 0.78 -0.3 863,643 - RR42_RS24630 0.78 -0.2 863,689 + RR42_RS24630 0.82 +0.0 863,731 + RR42_RS24630 0.84 -0.3 863,732 - RR42_RS24630 0.84 -0.6 863,732 - RR42_RS24630 0.84 +0.2 863,887 + -0.1 863,888 - -1.0 863,970 - -1.3 864,037 + -0.3 864,038 - -0.3 864,066 + +0.1 864,082 - RR42_RS24635 0.11 +0.7 864,189 + RR42_RS24635 0.28 -0.3 864,216 + RR42_RS24635 0.32 -0.0 864,217 - RR42_RS24635 0.32 -0.0 864,489 + RR42_RS24635 0.75 +0.0 864,520 - RR42_RS24635 0.80 +0.4 864,615 - +0.5 864,634 - -0.5 864,634 - -1.0 864,671 - -0.5 864,671 - -0.8 864,694 - -0.5 864,757 - -0.6 864,963 + RR42_RS24640 0.19 -0.6 865,095 + RR42_RS24640 0.27 +0.3 865,402 + RR42_RS24640 0.48 -1.5 865,402 + RR42_RS24640 0.48 -0.3 865,402 + RR42_RS24640 0.48 -0.5
Or see this region's nucleotide sequence