Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20365 and RR42_RS20370 are separated by 156 nucleotides RR42_RS20370 and RR42_RS20375 are separated by 144 nucleotides RR42_RS20375 and RR42_RS20380 are separated by 25 nucleotides
RR42_RS20365: RR42_RS20365 - phenylalanine-4-hydroxylase, at 4,410,715 to 4,411,647
_RS20365
RR42_RS20370: RR42_RS20370 - pterin-4-alpha-carbinolamine dehydratase, at 4,411,804 to 4,412,121
_RS20370
RR42_RS20375: RR42_RS20375 - transcriptional regulator, at 4,412,266 to 4,412,970
_RS20375
RR42_RS20380: RR42_RS20380 - histidine kinase, at 4,412,996 to 4,414,615
_RS20380
Position (kb) 4412
4413 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4411.294 kb on + strand, within RR42_RS20365 at 4411.295 kb on - strand, within RR42_RS20365 at 4411.342 kb on + strand, within RR42_RS20365 at 4411.381 kb on + strand, within RR42_RS20365 at 4411.382 kb on - strand, within RR42_RS20365 at 4411.474 kb on + strand, within RR42_RS20365 at 4411.474 kb on + strand, within RR42_RS20365 at 4411.474 kb on + strand, within RR42_RS20365 at 4411.474 kb on + strand, within RR42_RS20365 at 4411.475 kb on - strand, within RR42_RS20365 at 4411.537 kb on + strand, within RR42_RS20365 at 4411.537 kb on + strand, within RR42_RS20365 at 4411.537 kb on + strand, within RR42_RS20365 at 4411.538 kb on - strand, within RR42_RS20365 at 4411.829 kb on + strand at 4411.915 kb on - strand, within RR42_RS20370 at 4412.008 kb on + strand, within RR42_RS20370 at 4412.159 kb on - strand at 4412.194 kb on + strand at 4412.271 kb on + strand at 4412.271 kb on + strand at 4412.557 kb on + strand, within RR42_RS20375 at 4412.558 kb on - strand, within RR42_RS20375 at 4412.606 kb on + strand, within RR42_RS20375 at 4412.607 kb on - strand, within RR42_RS20375 at 4412.872 kb on + strand, within RR42_RS20375 at 4412.872 kb on + strand, within RR42_RS20375 at 4412.872 kb on + strand, within RR42_RS20375 at 4412.872 kb on + strand, within RR42_RS20375 at 4412.941 kb on + strand at 4413.191 kb on + strand, within RR42_RS20380 at 4413.192 kb on - strand, within RR42_RS20380 at 4413.192 kb on - strand, within RR42_RS20380 at 4413.209 kb on + strand at 4413.222 kb on + strand, within RR42_RS20380 at 4413.239 kb on + strand, within RR42_RS20380 at 4413.240 kb on - strand, within RR42_RS20380 at 4413.240 kb on - strand, within RR42_RS20380 at 4413.256 kb on + strand, within RR42_RS20380 at 4413.353 kb on + strand, within RR42_RS20380 at 4413.353 kb on + strand, within RR42_RS20380 at 4413.452 kb on + strand, within RR42_RS20380 at 4413.452 kb on + strand, within RR42_RS20380 at 4413.453 kb on - strand, within RR42_RS20380
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 4,411,294 + RR42_RS20365 0.62 +0.4 4,411,295 - RR42_RS20365 0.62 +1.0 4,411,342 + RR42_RS20365 0.67 -0.1 4,411,381 + RR42_RS20365 0.71 +1.2 4,411,382 - RR42_RS20365 0.71 -0.5 4,411,474 + RR42_RS20365 0.81 +0.6 4,411,474 + RR42_RS20365 0.81 +0.9 4,411,474 + RR42_RS20365 0.81 +0.3 4,411,474 + RR42_RS20365 0.81 +0.8 4,411,475 - RR42_RS20365 0.81 -0.2 4,411,537 + RR42_RS20365 0.88 +0.2 4,411,537 + RR42_RS20365 0.88 +1.2 4,411,537 + RR42_RS20365 0.88 +0.3 4,411,538 - RR42_RS20365 0.88 +0.4 4,411,829 + -0.6 4,411,915 - RR42_RS20370 0.35 +1.7 4,412,008 + RR42_RS20370 0.64 -1.6 4,412,159 - +0.8 4,412,194 + +0.0 4,412,271 + -1.9 4,412,271 + -2.7 4,412,557 + RR42_RS20375 0.41 -2.7 4,412,558 - RR42_RS20375 0.41 -2.1 4,412,606 + RR42_RS20375 0.48 -3.3 4,412,607 - RR42_RS20375 0.48 -2.0 4,412,872 + RR42_RS20375 0.86 -2.8 4,412,872 + RR42_RS20375 0.86 -3.4 4,412,872 + RR42_RS20375 0.86 +1.6 4,412,872 + RR42_RS20375 0.86 +0.0 4,412,941 + -2.4 4,413,191 + RR42_RS20380 0.12 -3.6 4,413,192 - RR42_RS20380 0.12 -4.0 4,413,192 - RR42_RS20380 0.12 -0.6 4,413,209 + -1.2 4,413,222 + RR42_RS20380 0.14 -1.7 4,413,239 + RR42_RS20380 0.15 +0.6 4,413,240 - RR42_RS20380 0.15 -2.5 4,413,240 - RR42_RS20380 0.15 -0.4 4,413,256 + RR42_RS20380 0.16 -2.6 4,413,353 + RR42_RS20380 0.22 -3.5 4,413,353 + RR42_RS20380 0.22 -3.5 4,413,452 + RR42_RS20380 0.28 +0.6 4,413,452 + RR42_RS20380 0.28 +1.6 4,413,453 - RR42_RS20380 0.28 -2.8
Or see this region's nucleotide sequence