Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18960

Experiment: Pimelic (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pimelic (C)
4,102,875	+				-0.7
4,102,876	-				+0.2
4,102,876	-				-2.1
4,102,876	-				-0.2
4,102,886	+				+0.8
4,102,886	+				-0.1
4,102,886	+				-0.8
4,102,886	+				-1.2
4,102,886	+				-0.0
4,102,886	+				-0.2
4,102,886	+				+0.0
4,102,886	+				-0.0
4,102,886	+				-0.8
4,102,886	+				-1.4
4,102,886	+				-0.1
4,102,886	+				-0.0
4,102,886	+				+0.1
4,102,887	-				+0.8
4,102,887	-				+0.0
4,102,887	-				-0.1
4,102,887	-				-1.8
4,102,887	-				-0.0
4,102,887	-				+0.9
4,103,061	+				-2.1
4,103,062	-				-0.2
4,103,171	+		RR42_RS18955	0.16	+0.5
4,103,171	+		RR42_RS18955	0.16	-0.5
4,103,171	+		RR42_RS18955	0.16	-0.7
4,103,171	+		RR42_RS18955	0.16	-1.6
4,103,171	+		RR42_RS18955	0.16	-0.5
4,103,171	+		RR42_RS18955	0.16	-0.9
4,103,171	+		RR42_RS18955	0.16	-0.0
4,103,171	+		RR42_RS18955	0.16	+0.1
4,103,171	+		RR42_RS18955	0.16	-0.5
4,103,172	-		RR42_RS18955	0.16	+0.6
4,103,172	-		RR42_RS18955	0.16	-0.4
4,103,172	-		RR42_RS18955	0.16	+0.4
4,103,172	-		RR42_RS18955	0.16	+0.3
4,103,173	+		RR42_RS18955	0.16	-0.6
4,103,199	-		RR42_RS18955	0.19	-0.6
4,103,219	+		RR42_RS18955	0.22	+0.2
4,103,219	+		RR42_RS18955	0.22	+1.5
4,103,219	+		RR42_RS18955	0.22	+0.3
4,103,219	+		RR42_RS18955	0.22	-1.0
4,103,220	-		RR42_RS18955	0.22	-0.0
4,103,220	-		RR42_RS18955	0.22	-0.3
4,103,220	-		RR42_RS18955	0.22	-1.0
4,103,328	+		RR42_RS18955	0.35	-0.7
4,103,328	+		RR42_RS18955	0.35	-0.3
4,103,328	+		RR42_RS18955	0.35	-0.5
4,103,329	-		RR42_RS18955	0.35	+1.7
4,103,330	+		RR42_RS18955	0.35	-0.1
4,103,330	+		RR42_RS18955	0.35	-0.4
4,103,330	+		RR42_RS18955	0.35	+0.3
4,103,331	-		RR42_RS18955	0.35	-1.1
4,103,373	+		RR42_RS18955	0.40	-0.4
4,103,414	+		RR42_RS18955	0.45	-1.7
4,103,415	-		RR42_RS18955	0.45	+1.5
4,103,437	+		RR42_RS18955	0.48	-0.5
4,103,437	+		RR42_RS18955	0.48	-0.8
4,103,438	-		RR42_RS18955	0.48	-0.3
4,103,468	+		RR42_RS18955	0.52	+0.0
4,103,468	+		RR42_RS18955	0.52	+0.2
4,103,660	+		RR42_RS18955	0.75	-0.3
4,103,660	+		RR42_RS18955	0.75	+0.1
4,103,660	+		RR42_RS18955	0.75	-1.3
4,103,661	-		RR42_RS18955	0.75	-0.4
4,103,669	+		RR42_RS18955	0.76	+1.5
4,103,669	+		RR42_RS18955	0.76	+0.7
4,103,670	-		RR42_RS18955	0.76	-0.8
4,103,670	-		RR42_RS18955	0.76	-1.5
4,103,748	+		RR42_RS18955	0.85	-1.2
4,103,748	+		RR42_RS18955	0.85	-0.8
4,103,954	+		RR42_RS18960	0.17	-2.7
4,103,954	+		RR42_RS18960	0.17	-2.0
4,103,954	+		RR42_RS18960	0.17	-0.8
4,103,954	+		RR42_RS18960	0.17	-2.8
4,103,955	-		RR42_RS18960	0.17	-1.6
4,103,955	-		RR42_RS18960	0.17	-1.2
4,103,955	-		RR42_RS18960	0.17	+0.9
4,103,956	+		RR42_RS18960	0.17	-1.4
4,103,956	+		RR42_RS18960	0.17	-1.5
4,103,956	+		RR42_RS18960	0.17	-3.1
4,103,956	+		RR42_RS18960	0.17	-3.0
4,103,957	-		RR42_RS18960	0.17	-0.8
4,103,957	-		RR42_RS18960	0.17	-0.1
4,103,957	-		RR42_RS18960	0.17	-1.8
4,103,957	-		RR42_RS18960	0.17	-1.0
4,103,957	-		RR42_RS18960	0.17	+1.2
4,104,064	+		RR42_RS18960	0.38	-1.8
4,104,064	+		RR42_RS18960	0.38	-3.1
4,104,064	+		RR42_RS18960	0.38	-1.8
4,104,065	-		RR42_RS18960	0.38	-1.1
4,104,065	-		RR42_RS18960	0.38	-0.4
4,104,065	-		RR42_RS18960	0.38	-2.7
4,104,065	-		RR42_RS18960	0.38	-1.5
4,104,065	-		RR42_RS18960	0.38	-1.7
4,104,160	+		RR42_RS18960	0.56	-2.1
4,104,160	+		RR42_RS18960	0.56	-1.9
4,104,160	+		RR42_RS18960	0.56	-2.3
4,104,161	-		RR42_RS18960	0.56	-2.0
4,104,161	-		RR42_RS18960	0.56	-2.4
4,104,161	-		RR42_RS18960	0.56	-1.0
4,104,183	-		RR42_RS18960	0.60	-2.2
4,104,248	+		RR42_RS18960	0.73	-1.8
4,104,248	+		RR42_RS18960	0.73	-3.4
4,104,249	-		RR42_RS18960	0.73	-3.2
4,104,249	-		RR42_RS18960	0.73	-1.9
4,104,251	+		RR42_RS18960	0.73	-2.2
4,104,251	+		RR42_RS18960	0.73	-2.7
4,104,252	-		RR42_RS18960	0.73	-2.8
4,104,252	-		RR42_RS18960	0.73	+0.2
4,104,274	+		RR42_RS18960	0.77	-0.9
4,104,274	+		RR42_RS18960	0.77	-2.4
4,104,274	+		RR42_RS18960	0.77	-2.0
4,104,275	-		RR42_RS18960	0.78	-3.0
4,104,275	-		RR42_RS18960	0.78	-1.8
4,104,275	-		RR42_RS18960	0.78	-1.9
4,104,380	+				-1.6
4,104,380	+				-1.0
4,104,380	+				-2.0
4,104,380	+				-1.8
4,104,381	-				-1.7
4,104,381	-				-2.7
4,104,381	-				-1.1
4,104,412	-				-0.1
4,104,412	-				-3.3
4,104,412	-				-1.7
4,104,557	+		RR42_RS18965	0.15	+1.5
4,104,557	+		RR42_RS18965	0.15	-2.2
4,104,566	+		RR42_RS18965	0.16	-1.4
4,104,567	-		RR42_RS18965	0.16	-3.8
4,104,574	+		RR42_RS18965	0.17	-2.6
4,104,574	+		RR42_RS18965	0.17	-2.1
4,104,574	+		RR42_RS18965	0.17	-1.5
4,104,574	+		RR42_RS18965	0.17	-1.5
4,104,574	+		RR42_RS18965	0.17	-2.1
4,104,574	+		RR42_RS18965	0.17	-0.7
4,104,574	+		RR42_RS18965	0.17	-3.8
4,104,576	+		RR42_RS18965	0.17	-1.4
4,104,577	-		RR42_RS18965	0.17	-2.7
4,104,609	+		RR42_RS18965	0.21	-1.8
4,104,609	+		RR42_RS18965	0.21	-2.4
4,104,609	+		RR42_RS18965	0.21	-0.1
4,104,609	+		RR42_RS18965	0.21	-2.1
4,104,609	+		RR42_RS18965	0.21	-2.3
4,104,610	-		RR42_RS18965	0.22	-5.1
4,104,710	+		RR42_RS18965	0.34	-1.6
4,104,710	+		RR42_RS18965	0.34	-2.1
4,104,710	+		RR42_RS18965	0.34	-3.1
4,104,710	+		RR42_RS18965	0.34	-0.5
4,104,710	+		RR42_RS18965	0.34	-2.6
4,104,710	+		RR42_RS18965	0.34	-2.0
4,104,710	+		RR42_RS18965	0.34	-3.7
4,104,710	+		RR42_RS18965	0.34	-3.8
4,104,710	+		RR42_RS18965	0.34	-1.7
4,104,710	+		RR42_RS18965	0.34	-2.2
4,104,710	+		RR42_RS18965	0.34	-2.9
4,104,710	+		RR42_RS18965	0.34	-3.0
4,104,995	+		RR42_RS18965	0.71	-2.8
4,104,995	+		RR42_RS18965	0.71	-1.4
4,104,995	+		RR42_RS18965	0.71	-3.4
4,104,995	+		RR42_RS18965	0.71	-4.4
4,104,996	-		RR42_RS18965	0.71	-3.9
4,104,998	+		RR42_RS18965	0.72	-2.0
4,104,998	+		RR42_RS18965	0.72	-0.0
4,104,998	+		RR42_RS18965	0.72	-1.3
4,104,999	-		RR42_RS18965	0.72	-1.5
4,105,132	+		RR42_RS18965	0.89	-0.5
4,105,264	+				-0.8
4,105,265	-				-2.3
4,105,384	+		RR42_RS18970	0.21	-1.0
4,105,384	+		RR42_RS18970	0.21	-1.9
4,105,384	+		RR42_RS18970	0.21	-0.5
4,105,385	-		RR42_RS18970	0.21	-4.3
4,105,390	+		RR42_RS18970	0.21	-1.9
4,105,390	+		RR42_RS18970	0.21	-2.9
4,105,390	+		RR42_RS18970	0.21	-1.9
4,105,391	+		RR42_RS18970	0.21	-1.5
4,105,391	-		RR42_RS18970	0.21	-2.3
4,105,391	-		RR42_RS18970	0.21	-2.1