Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c33720

Experiment: DinoMM minimal media

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	DinoMM minimal media
3,534,066	+		PGA1_c33710	0.14	-0.9
3,534,066	+		PGA1_c33710	0.14	-0.2
3,534,066	+		PGA1_c33710	0.14	+0.4
3,534,068	-		PGA1_c33710	0.14	-1.1
3,534,069	-		PGA1_c33710	0.14	-0.5
3,534,070	+		PGA1_c33710	0.14	+1.3
3,534,070	+		PGA1_c33710	0.14	+0.9
3,534,073	-		PGA1_c33710	0.14	-1.3
3,534,073	-		PGA1_c33710	0.14	+0.1
3,534,073	-		PGA1_c33710	0.14	-0.6
3,534,089	+		PGA1_c33710	0.16	-1.0
3,534,089	+		PGA1_c33710	0.16	-0.1
3,534,089	+		PGA1_c33710	0.16	+0.6
3,534,097	-		PGA1_c33710	0.17	+0.7
3,534,097	-		PGA1_c33710	0.17	-1.1
3,534,103	-		PGA1_c33710	0.17	+0.6
3,534,135	-		PGA1_c33710	0.21	-2.0
3,534,145	-		PGA1_c33710	0.22	-0.0
3,534,209	+		PGA1_c33710	0.28	-2.3
3,534,212	+		PGA1_c33710	0.28	+0.4
3,534,212	+		PGA1_c33710	0.28	+0.3
3,534,255	+		PGA1_c33710	0.33	+1.2
3,534,271	+		PGA1_c33710	0.34	+0.2
3,534,273	+		PGA1_c33710	0.35	+0.3
3,534,278	+		PGA1_c33710	0.35	+0.3
3,534,330	-		PGA1_c33710	0.40	+0.3
3,534,352	+		PGA1_c33710	0.42	-1.3
3,534,371	+		PGA1_c33710	0.44	+1.1
3,534,374	-		PGA1_c33710	0.45	-0.1
3,534,379	-		PGA1_c33710	0.45	+0.7
3,534,420	+		PGA1_c33710	0.49	+1.1
3,534,426	+		PGA1_c33710	0.50	+0.1
3,534,433	-		PGA1_c33710	0.51	-0.7
3,534,475	+		PGA1_c33710	0.55	-0.2
3,534,475	+		PGA1_c33710	0.55	+0.3
3,534,475	+		PGA1_c33710	0.55	-0.8
3,534,475	+		PGA1_c33710	0.55	+0.3
3,534,475	+		PGA1_c33710	0.55	+1.7
3,534,477	-		PGA1_c33710	0.55	-1.8
3,534,483	-		PGA1_c33710	0.56	-0.6
3,534,483	-		PGA1_c33710	0.56	-1.1
3,534,483	-		PGA1_c33710	0.56	+1.7
3,534,485	+		PGA1_c33710	0.56	+1.1
3,534,543	+		PGA1_c33710	0.62	-1.5
3,534,556	+		PGA1_c33710	0.63	-1.1
3,534,564	-		PGA1_c33710	0.64	+2.1
3,534,566	-		PGA1_c33710	0.64	-0.1
3,534,577	-		PGA1_c33710	0.65	-1.0
3,534,600	+		PGA1_c33710	0.67	-2.2
3,534,604	+		PGA1_c33710	0.68	-0.2
3,534,607	-		PGA1_c33710	0.68	-0.9
3,534,609	+		PGA1_c33710	0.68	+1.0
3,534,609	+		PGA1_c33710	0.68	+0.9
3,534,609	+		PGA1_c33710	0.68	-0.6
3,534,612	+		PGA1_c33710	0.69	-0.6
3,534,614	+		PGA1_c33710	0.69	+1.7
3,534,614	+		PGA1_c33710	0.69	+0.8
3,534,617	-		PGA1_c33710	0.69	+0.2
3,534,619	+		PGA1_c33710	0.69	-1.1
3,534,619	+		PGA1_c33710	0.69	-0.9
3,534,622	-		PGA1_c33710	0.70	+0.6
3,534,622	-		PGA1_c33710	0.70	+0.0
3,534,622	-		PGA1_c33710	0.70	-0.6
3,534,622	-		PGA1_c33710	0.70	-0.0
3,534,622	-		PGA1_c33710	0.70	-0.5
3,534,622	-		PGA1_c33710	0.70	-0.9
3,534,622	-		PGA1_c33710	0.70	-0.1
3,534,627	-		PGA1_c33710	0.70	+1.4
3,534,627	-		PGA1_c33710	0.70	-0.4
3,534,663	+		PGA1_c33710	0.74	-1.1
3,534,708	+		PGA1_c33710	0.78	+0.4
3,534,716	-		PGA1_c33710	0.79	-0.8
3,534,735	-		PGA1_c33710	0.81	-0.4
3,534,738	+		PGA1_c33710	0.81	-0.6
3,534,738	+		PGA1_c33710	0.81	-2.8
3,534,738	+		PGA1_c33710	0.81	-2.2
3,534,738	+		PGA1_c33710	0.81	-0.6
3,534,738	+		PGA1_c33710	0.81	+1.3
3,534,738	+		PGA1_c33710	0.81	-0.5
3,534,738	+		PGA1_c33710	0.81	-0.6
3,534,738	+		PGA1_c33710	0.81	-0.2
3,534,738	+		PGA1_c33710	0.81	-0.1
3,534,738	+		PGA1_c33710	0.81	+1.7
3,534,746	-		PGA1_c33710	0.82	+0.0
3,534,746	-		PGA1_c33710	0.82	+1.1
3,534,746	-		PGA1_c33710	0.82	-0.3
3,534,746	-		PGA1_c33710	0.82	+0.8
3,534,791	+		PGA1_c33710	0.87	-0.6
3,534,802	+		PGA1_c33710	0.88	+0.1
3,534,810	-		PGA1_c33710	0.88	-1.3
3,534,826	+				-0.4
3,534,834	-				-0.0
3,534,861	-				-1.1
3,534,861	-				+1.1
3,534,861	-				+0.9
3,534,861	-				+0.9
3,534,861	-				+0.1
3,534,868	+				+0.1
3,534,868	+				+1.7
3,534,901	-				+0.9
3,534,911	-				+0.7
3,534,912	+				+1.1
3,535,000	+				+1.5
3,535,002	+				-0.3
3,535,002	+				-0.1
3,535,002	+				+0.5
3,535,051	+				+1.2
3,535,051	+				-0.4
3,535,051	+				+1.5
3,535,059	-				-0.3
3,535,059	-				+0.1
3,535,075	+				-1.4
3,535,084	-				+0.2
3,535,094	-				-0.8
3,535,094	-				-1.9
3,535,103	+				-1.3
3,535,111	-				-0.4
3,535,133	+				+1.9
3,535,133	+				-1.1
3,535,133	+				+1.1
3,535,133	+				-0.7
3,535,171	-		PGA1_c33720	0.12	-0.6
3,535,208	-		PGA1_c33720	0.16	+0.7
3,535,273	+		PGA1_c33720	0.22	-0.3
3,535,398	+		PGA1_c33720	0.35	+0.2
3,535,398	+		PGA1_c33720	0.35	+0.9
3,535,441	-		PGA1_c33720	0.39	-1.8
3,535,445	-		PGA1_c33720	0.39	-0.6
3,535,445	-		PGA1_c33720	0.39	-0.7
3,535,487	-		PGA1_c33720	0.43	-0.1
3,535,495	+		PGA1_c33720	0.44	-0.3
3,535,513	+		PGA1_c33720	0.46	-0.9
3,535,517	+		PGA1_c33720	0.46	+0.9
3,535,622	-		PGA1_c33720	0.57	-0.9
3,535,646	-		PGA1_c33720	0.59	+0.4
3,535,646	-		PGA1_c33720	0.59	-1.0
3,535,697	-		PGA1_c33720	0.64	-1.8
3,535,708	-		PGA1_c33720	0.65	-1.1
3,535,762	+		PGA1_c33720	0.70	-1.6
3,535,803	+		PGA1_c33720	0.74	+2.3
3,535,830	-		PGA1_c33720	0.77	+0.4
3,535,835	-		PGA1_c33720	0.78	+0.8
3,535,836	-		PGA1_c33720	0.78	+1.2
3,535,880	+		PGA1_c33720	0.82	-2.5
3,535,881	+		PGA1_c33720	0.82	+0.1
3,535,894	+		PGA1_c33720	0.83	-0.2
3,535,903	-		PGA1_c33720	0.84	-0.9
3,535,915	+		PGA1_c33720	0.86	-0.4
3,535,925	+		PGA1_c33720	0.86	-0.9
3,535,933	-		PGA1_c33720	0.87	-0.9
3,535,933	-		PGA1_c33720	0.87	-0.9
3,535,933	-		PGA1_c33720	0.87	+0.1
3,535,938	-		PGA1_c33720	0.88	-0.1
3,535,959	+		PGA1_c33720	0.90	-1.2
3,535,961	+				-1.1
3,535,991	-				+0.6
3,536,013	-				-0.6
3,536,015	+				-0.1
3,536,015	+				-1.6
3,536,023	-				-1.3
3,536,082	-				+0.7
3,536,128	-				-1.1
3,536,128	-				-0.0
3,536,145	+		PGA1_c33730	0.11	+0.3
3,536,165	+		PGA1_c33730	0.14	-0.1
3,536,246	-		PGA1_c33730	0.25	-0.6
3,536,248	+		PGA1_c33730	0.26	+0.1
3,536,251	-		PGA1_c33730	0.26	+0.5
3,536,282	+		PGA1_c33730	0.30	+1.2
3,536,290	-		PGA1_c33730	0.31	-0.6
3,536,291	-		PGA1_c33730	0.32	+0.7
3,536,291	-		PGA1_c33730	0.32	+0.7
3,536,309	+		PGA1_c33730	0.34	-0.9
3,536,317	+		PGA1_c33730	0.35	+2.7
3,536,329	+		PGA1_c33730	0.37	-0.0
3,536,329	+		PGA1_c33730	0.37	-0.1
3,536,329	+		PGA1_c33730	0.37	-1.3
3,536,329	+		PGA1_c33730	0.37	+0.5
3,536,332	-		PGA1_c33730	0.37	+0.9
3,536,337	-		PGA1_c33730	0.38	+1.2
3,536,337	-		PGA1_c33730	0.38	-1.1
3,536,337	-		PGA1_c33730	0.38	+0.2
3,536,354	+		PGA1_c33730	0.40	+1.7
3,536,362	-		PGA1_c33730	0.41	-0.6
3,536,423	+		PGA1_c33730	0.50	-0.3
3,536,431	-		PGA1_c33730	0.51	-0.3
3,536,452	-		PGA1_c33730	0.54	-0.1
3,536,459	+		PGA1_c33730	0.55	-0.3
3,536,468	+		PGA1_c33730	0.56	-0.8
3,536,468	+		PGA1_c33730	0.56	-0.2
3,536,468	+		PGA1_c33730	0.56	+0.9
3,536,470	+		PGA1_c33730	0.56	-0.7
3,536,476	-		PGA1_c33730	0.57	+0.1
3,536,476	-		PGA1_c33730	0.57	-1.6
3,536,478	+		PGA1_c33730	0.58	+2.7
3,536,486	-		PGA1_c33730	0.59	+0.1
3,536,497	-		PGA1_c33730	0.60	-0.5
3,536,542	-		PGA1_c33730	0.67	+0.3
3,536,606	-		PGA1_c33730	0.75	-0.3
3,536,609	+		PGA1_c33730	0.76	+0.7
3,536,609	+		PGA1_c33730	0.76	-0.6
3,536,612	+		PGA1_c33730	0.76	+0.3
3,536,637	-		PGA1_c33730	0.80	+1.7
3,536,664	+		PGA1_c33730	0.84	-0.3
3,536,684	+		PGA1_c33730	0.86	-0.6
3,536,789	+				+0.2
3,536,792	-				-0.8
3,536,840	+				+0.4
3,536,840	+				+1.0
3,536,840	+				-0.2
3,536,846	-				-1.8
3,536,848	-				-2.3
3,536,848	-				+1.1
3,536,848	-				+0.5
3,536,848	-				-0.0
3,536,848	-				+0.2
3,536,848	-				+1.3
3,536,848	-				-0.6
3,536,848	-				-0.1
3,536,848	-				-1.0
3,536,848	-				+1.2
3,536,848	-				-0.9
3,536,848	-				-0.2
3,536,854	+				-0.9
3,536,859	+				-0.2
3,536,859	+				-1.6
3,536,867	+				-0.9
3,536,867	-				+0.5
3,536,875	-				-0.3
3,536,925	+				+0.1
3,536,929	-				+0.6
3,536,941	-				+1.1
3,537,032	+				+0.0
3,537,032	+				+0.1
3,537,037	+				-0.3
3,537,037	+				-1.3
3,537,037	+				+1.3
3,537,037	+				+3.5
3,537,040	-				+0.5
3,537,057	+				-0.6
3,537,057	+				+1.2