Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24635 and BWI76_RS24640 overlap by 4 nucleotides BWI76_RS24640 and BWI76_RS24645 are separated by 11 nucleotides BWI76_RS24645 and BWI76_RS24650 are separated by 1 nucleotides BWI76_RS24650 and BWI76_RS24655 are separated by 0 nucleotides
BWI76_RS24635: BWI76_RS24635 - autoinducer-2 (AI-2) modifying protein LsrG, at 5,134,807 to 5,135,103
_RS24635
BWI76_RS24640: BWI76_RS24640 - aldolase, at 5,135,100 to 5,135,987
_RS24640
BWI76_RS24645: BWI76_RS24645 - autoinducer 2 ABC transporter substrate-binding protein, at 5,135,999 to 5,137,000
_RS24645
BWI76_RS24650: BWI76_RS24650 - putative transport system permease component, at 5,137,002 to 5,137,994
_RS24650
BWI76_RS24655: BWI76_RS24655 - autoinducer 2 ABC transporter permease LsrC, at 5,137,995 to 5,139,029
_RS24655
Position (kb) 5135
5136
5137
5138 Strain fitness (log2 ratio) -2
-1
0
1 at 5135.021 kb on + strand, within BWI76_RS24635 at 5135.041 kb on - strand, within BWI76_RS24635 at 5135.136 kb on - strand at 5135.285 kb on - strand, within BWI76_RS24640 at 5135.330 kb on - strand, within BWI76_RS24640 at 5135.490 kb on - strand, within BWI76_RS24640 at 5135.496 kb on - strand, within BWI76_RS24640 at 5135.557 kb on + strand, within BWI76_RS24640 at 5135.565 kb on - strand, within BWI76_RS24640 at 5135.722 kb on - strand, within BWI76_RS24640 at 5135.754 kb on - strand, within BWI76_RS24640 at 5135.938 kb on - strand at 5135.948 kb on - strand at 5136.097 kb on - strand at 5136.101 kb on + strand, within BWI76_RS24645 at 5136.258 kb on + strand, within BWI76_RS24645 at 5136.266 kb on - strand, within BWI76_RS24645 at 5136.266 kb on - strand, within BWI76_RS24645 at 5136.569 kb on + strand, within BWI76_RS24645 at 5136.680 kb on + strand, within BWI76_RS24645 at 5136.713 kb on + strand, within BWI76_RS24645 at 5136.805 kb on + strand, within BWI76_RS24645 at 5136.828 kb on - strand, within BWI76_RS24645 at 5136.844 kb on + strand, within BWI76_RS24645 at 5136.844 kb on + strand, within BWI76_RS24645 at 5136.957 kb on + strand at 5137.044 kb on + strand at 5137.105 kb on + strand, within BWI76_RS24650 at 5137.371 kb on - strand, within BWI76_RS24650 at 5137.549 kb on - strand, within BWI76_RS24650 at 5137.585 kb on + strand, within BWI76_RS24650 at 5137.687 kb on + strand, within BWI76_RS24650 at 5137.970 kb on - strand at 5137.970 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x remove 5,135,021 + BWI76_RS24635 0.72 -0.3 5,135,041 - BWI76_RS24635 0.79 +0.1 5,135,136 - -0.3 5,135,285 - BWI76_RS24640 0.21 +0.5 5,135,330 - BWI76_RS24640 0.26 +0.3 5,135,490 - BWI76_RS24640 0.44 -1.5 5,135,496 - BWI76_RS24640 0.45 +0.6 5,135,557 + BWI76_RS24640 0.51 +0.1 5,135,565 - BWI76_RS24640 0.52 +0.3 5,135,722 - BWI76_RS24640 0.70 -0.3 5,135,754 - BWI76_RS24640 0.74 +0.3 5,135,938 - +0.6 5,135,948 - +0.3 5,136,097 - -0.7 5,136,101 + BWI76_RS24645 0.10 +0.5 5,136,258 + BWI76_RS24645 0.26 -0.0 5,136,266 - BWI76_RS24645 0.27 -1.9 5,136,266 - BWI76_RS24645 0.27 +0.5 5,136,569 + BWI76_RS24645 0.57 +0.7 5,136,680 + BWI76_RS24645 0.68 +1.1 5,136,713 + BWI76_RS24645 0.71 +1.0 5,136,805 + BWI76_RS24645 0.80 +0.6 5,136,828 - BWI76_RS24645 0.83 +0.4 5,136,844 + BWI76_RS24645 0.84 +1.1 5,136,844 + BWI76_RS24645 0.84 -0.8 5,136,957 + +0.1 5,137,044 + -0.5 5,137,105 + BWI76_RS24650 0.10 +0.1 5,137,371 - BWI76_RS24650 0.37 +0.2 5,137,549 - BWI76_RS24650 0.55 +0.6 5,137,585 + BWI76_RS24650 0.59 -0.6 5,137,687 + BWI76_RS24650 0.69 -0.3 5,137,970 - -0.0 5,137,970 - -0.9
Or see this region's nucleotide sequence