Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19790 and BWI76_RS19795 are separated by 1 nucleotides BWI76_RS19795 and BWI76_RS19800 are separated by 3 nucleotides BWI76_RS19800 and BWI76_RS19805 are separated by 330 nucleotides
BWI76_RS19790: BWI76_RS19790 - putative binding-protein-dependent transporter, at 4,138,597 to 4,139,622
_RS19790
BWI76_RS19795: BWI76_RS19795 - microcin C ABC transporter ATP-binding protein YejF, at 4,139,624 to 4,141,213
_RS19795
BWI76_RS19800: BWI76_RS19800 - hypothetical protein, at 4,141,217 to 4,141,561
_RS19800
BWI76_RS19805: BWI76_RS19805 - Bcr/CflA family multidrug efflux MFS transporter, at 4,141,892 to 4,143,088
_RS19805
Position (kb)
4139
4140
4141
4142 Strain fitness (log2 ratio)
-1
0
1 at 4138.837 kb on - strand, within BWI76_RS19790 at 4138.964 kb on - strand, within BWI76_RS19790 at 4139.086 kb on + strand, within BWI76_RS19790 at 4139.115 kb on + strand, within BWI76_RS19790 at 4139.181 kb on + strand, within BWI76_RS19790 at 4139.189 kb on - strand, within BWI76_RS19790 at 4139.393 kb on + strand, within BWI76_RS19790 at 4140.272 kb on - strand, within BWI76_RS19795 at 4140.272 kb on - strand, within BWI76_RS19795 at 4140.381 kb on - strand, within BWI76_RS19795 at 4140.381 kb on - strand, within BWI76_RS19795 at 4140.409 kb on + strand, within BWI76_RS19795 at 4140.577 kb on - strand, within BWI76_RS19795 at 4140.926 kb on + strand, within BWI76_RS19795 at 4141.032 kb on - strand, within BWI76_RS19795 at 4141.052 kb on - strand, within BWI76_RS19795 at 4141.109 kb on - strand at 4141.152 kb on - strand at 4141.532 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x remove 4,138,837 - BWI76_RS19790 0.23 +0.4 4,138,964 - BWI76_RS19790 0.36 -0.2 4,139,086 + BWI76_RS19790 0.48 -0.0 4,139,115 + BWI76_RS19790 0.50 +0.2 4,139,181 + BWI76_RS19790 0.57 +0.3 4,139,189 - BWI76_RS19790 0.58 +0.3 4,139,393 + BWI76_RS19790 0.78 -0.2 4,140,272 - BWI76_RS19795 0.41 +1.1 4,140,272 - BWI76_RS19795 0.41 +0.5 4,140,381 - BWI76_RS19795 0.48 +0.3 4,140,381 - BWI76_RS19795 0.48 +1.1 4,140,409 + BWI76_RS19795 0.49 -0.1 4,140,577 - BWI76_RS19795 0.60 +0.7 4,140,926 + BWI76_RS19795 0.82 +0.5 4,141,032 - BWI76_RS19795 0.89 +0.2 4,141,052 - BWI76_RS19795 0.90 +0.5 4,141,109 - -1.4 4,141,152 - -0.1 4,141,532 + +1.5
Or see this region's nucleotide sequence