Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19670 and BWI76_RS19675 are separated by 53 nucleotides BWI76_RS19675 and BWI76_RS19680 overlap by 14 nucleotides BWI76_RS19680 and BWI76_RS19685 are separated by 303 nucleotides
BWI76_RS19670: BWI76_RS19670 - S-formylglutathione hydrolase, at 4,110,283 to 4,111,119
_RS19670
BWI76_RS19675: BWI76_RS19675 - hypothetical protein, at 4,111,173 to 4,111,370
_RS19675
BWI76_RS19680: BWI76_RS19680 - catecholate siderophore receptor CirA, at 4,111,357 to 4,113,330
_RS19680
BWI76_RS19685: BWI76_RS19685 - lysine transporter, at 4,113,634 to 4,115,103
_RS19685
Position (kb)
4111
4112
4113
4114 Strain fitness (log2 ratio)
-1
0
1
2 at 4110.568 kb on - strand, within BWI76_RS19670 at 4110.738 kb on + strand, within BWI76_RS19670 at 4111.299 kb on - strand, within BWI76_RS19675 at 4111.431 kb on - strand at 4111.431 kb on - strand at 4111.517 kb on - strand at 4111.775 kb on + strand, within BWI76_RS19680 at 4112.021 kb on - strand, within BWI76_RS19680 at 4112.137 kb on + strand, within BWI76_RS19680 at 4112.209 kb on + strand, within BWI76_RS19680 at 4112.411 kb on + strand, within BWI76_RS19680 at 4112.419 kb on - strand, within BWI76_RS19680 at 4112.819 kb on - strand, within BWI76_RS19680 at 4112.907 kb on - strand, within BWI76_RS19680 at 4113.144 kb on - strand at 4113.154 kb on - strand at 4113.320 kb on + strand at 4113.450 kb on + strand at 4113.607 kb on + strand at 4113.697 kb on - strand at 4113.753 kb on - strand at 4113.815 kb on - strand, within BWI76_RS19685 at 4113.858 kb on + strand, within BWI76_RS19685 at 4113.935 kb on - strand, within BWI76_RS19685
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x remove 4,110,568 - BWI76_RS19670 0.34 +0.3 4,110,738 + BWI76_RS19670 0.54 +0.3 4,111,299 - BWI76_RS19675 0.64 -0.2 4,111,431 - +0.8 4,111,431 - +0.2 4,111,517 - +0.5 4,111,775 + BWI76_RS19680 0.21 +1.1 4,112,021 - BWI76_RS19680 0.34 +1.9 4,112,137 + BWI76_RS19680 0.40 +0.6 4,112,209 + BWI76_RS19680 0.43 +0.5 4,112,411 + BWI76_RS19680 0.53 +0.6 4,112,419 - BWI76_RS19680 0.54 +0.9 4,112,819 - BWI76_RS19680 0.74 -0.5 4,112,907 - BWI76_RS19680 0.79 -0.2 4,113,144 - +0.4 4,113,154 - +0.6 4,113,320 + +0.8 4,113,450 + +0.0 4,113,607 + -0.1 4,113,697 - -1.0 4,113,753 - -1.4 4,113,815 - BWI76_RS19685 0.12 -1.1 4,113,858 + BWI76_RS19685 0.15 +0.2 4,113,935 - BWI76_RS19685 0.20 -1.2
Or see this region's nucleotide sequence