Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16355 and BWI76_RS16360 overlap by 1 nucleotides BWI76_RS16360 and BWI76_RS16365 overlap by 8 nucleotides BWI76_RS16365 and BWI76_RS16370 are separated by 0 nucleotides
BWI76_RS16355: BWI76_RS16355 - electron transport complex subunit A, at 3,393,602 to 3,394,183
_RS16355
BWI76_RS16360: BWI76_RS16360 - electron transport complex subunit RsxB, at 3,394,183 to 3,394,761
_RS16360
BWI76_RS16365: BWI76_RS16365 - electron transport complex subunit RsxC, at 3,394,754 to 3,396,814
_RS16365
BWI76_RS16370: BWI76_RS16370 - electron transport complex subunit D, at 3,396,815 to 3,397,867
_RS16370
Position (kb)
3394
3395
3396
3397 Strain fitness (log2 ratio)
-1
0
1
2 at 3393.970 kb on + strand, within BWI76_RS16355 at 3394.192 kb on + strand at 3394.369 kb on - strand, within BWI76_RS16360 at 3394.890 kb on + strand at 3395.046 kb on - strand, within BWI76_RS16365 at 3395.263 kb on - strand, within BWI76_RS16365 at 3395.451 kb on + strand, within BWI76_RS16365 at 3395.459 kb on - strand, within BWI76_RS16365 at 3395.459 kb on - strand at 3395.750 kb on - strand, within BWI76_RS16365 at 3396.157 kb on - strand, within BWI76_RS16365 at 3396.239 kb on + strand, within BWI76_RS16365 at 3396.242 kb on - strand, within BWI76_RS16365 at 3396.464 kb on + strand, within BWI76_RS16365 at 3396.730 kb on - strand at 3396.996 kb on + strand, within BWI76_RS16370 at 3396.996 kb on + strand, within BWI76_RS16370 at 3397.308 kb on + strand, within BWI76_RS16370 at 3397.364 kb on + strand, within BWI76_RS16370 at 3397.622 kb on + strand, within BWI76_RS16370
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x remove 3,393,970 + BWI76_RS16355 0.63 +0.3 3,394,192 + +0.7 3,394,369 - BWI76_RS16360 0.32 +1.0 3,394,890 + +0.3 3,395,046 - BWI76_RS16365 0.14 +0.7 3,395,263 - BWI76_RS16365 0.25 +0.7 3,395,451 + BWI76_RS16365 0.34 -0.1 3,395,459 - BWI76_RS16365 0.34 -1.3 3,395,459 - +0.1 3,395,750 - BWI76_RS16365 0.48 +0.6 3,396,157 - BWI76_RS16365 0.68 +1.2 3,396,239 + BWI76_RS16365 0.72 +0.3 3,396,242 - BWI76_RS16365 0.72 -0.0 3,396,464 + BWI76_RS16365 0.83 +0.6 3,396,730 - +0.1 3,396,996 + BWI76_RS16370 0.17 +0.7 3,396,996 + BWI76_RS16370 0.17 +2.1 3,397,308 + BWI76_RS16370 0.47 +0.1 3,397,364 + BWI76_RS16370 0.52 +1.0 3,397,622 + BWI76_RS16370 0.77 -0.0
Or see this region's nucleotide sequence