Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14605 and BWI76_RS14610 are separated by 3 nucleotides BWI76_RS14610 and BWI76_RS14615 are separated by 13 nucleotides BWI76_RS14615 and BWI76_RS14620 overlap by 1 nucleotides
BWI76_RS14605: BWI76_RS14605 - ABC transporter permease, at 3,065,451 to 3,066,461
_RS14605
BWI76_RS14610: BWI76_RS14610 - putative hydrolase, at 3,066,465 to 3,067,544
_RS14610
BWI76_RS14615: BWI76_RS14615 - hypothetical protein, at 3,067,558 to 3,068,313
_RS14615
BWI76_RS14620: BWI76_RS14620 - acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase, at 3,068,313 to 3,069,425
_RS14620
Position (kb)
3066
3067
3068 Strain fitness (log2 ratio)
-2
-1
0
1 at 3065.539 kb on - strand at 3065.720 kb on + strand, within BWI76_RS14605 at 3065.923 kb on - strand, within BWI76_RS14605 at 3066.091 kb on - strand, within BWI76_RS14605 at 3066.231 kb on - strand, within BWI76_RS14605 at 3066.305 kb on + strand, within BWI76_RS14605 at 3066.399 kb on - strand at 3066.900 kb on + strand, within BWI76_RS14610 at 3067.185 kb on - strand, within BWI76_RS14610 at 3067.315 kb on - strand, within BWI76_RS14610 at 3067.504 kb on - strand at 3067.587 kb on + strand at 3067.587 kb on + strand at 3067.595 kb on - strand at 3067.796 kb on + strand, within BWI76_RS14615
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x remove 3,065,539 - -0.9 3,065,720 + BWI76_RS14605 0.27 -0.0 3,065,923 - BWI76_RS14605 0.47 +0.1 3,066,091 - BWI76_RS14605 0.63 +0.4 3,066,231 - BWI76_RS14605 0.77 +0.2 3,066,305 + BWI76_RS14605 0.84 +0.5 3,066,399 - -2.2 3,066,900 + BWI76_RS14610 0.40 +0.4 3,067,185 - BWI76_RS14610 0.67 +0.3 3,067,315 - BWI76_RS14610 0.79 +0.5 3,067,504 - -0.5 3,067,587 + +0.1 3,067,587 + +0.5 3,067,595 - +1.1 3,067,796 + BWI76_RS14615 0.31 -0.3
Or see this region's nucleotide sequence