Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07595 and BWI76_RS07600 are separated by 182 nucleotides BWI76_RS07600 and BWI76_RS07605 are separated by 186 nucleotides BWI76_RS07605 and BWI76_RS07610 are separated by 49 nucleotides
BWI76_RS07595: BWI76_RS07595 - putative oxidoreductase, at 1,608,243 to 1,609,007
_RS07595
BWI76_RS07600: BWI76_RS07600 - aspartate aminotransferase family protein, at 1,609,190 to 1,610,527
_RS07600
BWI76_RS07605: BWI76_RS07605 - N-acetyltransferase GCN5, at 1,610,714 to 1,611,409
_RS07605
BWI76_RS07610: BWI76_RS07610 - choline dehydrogenase, at 1,611,459 to 1,613,123
_RS07610
Position (kb) 1609
1610
1611 Strain fitness (log2 ratio) -1
0
1
2 at 1608.249 kb on - strand at 1608.347 kb on - strand, within BWI76_RS07595 at 1608.352 kb on + strand, within BWI76_RS07595 at 1608.570 kb on - strand, within BWI76_RS07595 at 1608.873 kb on - strand, within BWI76_RS07595 at 1609.040 kb on + strand at 1609.215 kb on - strand at 1609.287 kb on + strand at 1609.588 kb on + strand, within BWI76_RS07600 at 1609.588 kb on + strand, within BWI76_RS07600 at 1609.588 kb on + strand, within BWI76_RS07600 at 1609.596 kb on - strand, within BWI76_RS07600 at 1609.779 kb on - strand, within BWI76_RS07600 at 1610.576 kb on + strand at 1610.586 kb on + strand at 1610.697 kb on + strand at 1610.795 kb on + strand, within BWI76_RS07605 at 1610.827 kb on + strand, within BWI76_RS07605 at 1610.872 kb on - strand, within BWI76_RS07605 at 1610.956 kb on + strand, within BWI76_RS07605 at 1611.450 kb on + strand at 1611.458 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x remove 1,608,249 - +0.0 1,608,347 - BWI76_RS07595 0.14 -0.0 1,608,352 + BWI76_RS07595 0.14 -0.4 1,608,570 - BWI76_RS07595 0.43 -0.7 1,608,873 - BWI76_RS07595 0.82 -0.8 1,609,040 + +2.1 1,609,215 - -0.5 1,609,287 + -0.4 1,609,588 + BWI76_RS07600 0.30 +0.4 1,609,588 + BWI76_RS07600 0.30 +0.4 1,609,588 + BWI76_RS07600 0.30 +0.5 1,609,596 - BWI76_RS07600 0.30 +1.2 1,609,779 - BWI76_RS07600 0.44 -0.1 1,610,576 + +0.3 1,610,586 + -0.2 1,610,697 + +0.2 1,610,795 + BWI76_RS07605 0.12 -0.1 1,610,827 + BWI76_RS07605 0.16 -0.6 1,610,872 - BWI76_RS07605 0.23 -0.6 1,610,956 + BWI76_RS07605 0.35 -0.6 1,611,450 + -0.6 1,611,458 - +0.4
Or see this region's nucleotide sequence