Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06575 and BWI76_RS06580 are separated by 115 nucleotides BWI76_RS06580 and BWI76_RS06585 are separated by 42 nucleotides BWI76_RS06585 and BWI76_RS06590 overlap by 8 nucleotides
BWI76_RS06575: BWI76_RS06575 - cysteine synthase, at 1,382,307 to 1,383,359
_RS06575
BWI76_RS06580: BWI76_RS06580 - transcriptional regulator, at 1,383,475 to 1,383,933
_RS06580
BWI76_RS06585: BWI76_RS06585 - multidrug ABC transporter permease/ATP-binding protein, at 1,383,976 to 1,385,748
_RS06585
BWI76_RS06590: BWI76_RS06590 - multidrug ABC transporter permease/ATP-binding protein, at 1,385,741 to 1,387,519
_RS06590
Position (kb) 1383
1384
1385
1386 Strain fitness (log2 ratio) -1
0
1 at 1383.246 kb on + strand, within BWI76_RS06575 at 1383.398 kb on - strand at 1383.562 kb on - strand, within BWI76_RS06580 at 1383.567 kb on - strand, within BWI76_RS06580 at 1383.689 kb on - strand, within BWI76_RS06580 at 1383.964 kb on + strand at 1384.045 kb on - strand at 1384.241 kb on + strand, within BWI76_RS06585 at 1384.397 kb on + strand, within BWI76_RS06585 at 1384.402 kb on + strand, within BWI76_RS06585 at 1384.410 kb on - strand, within BWI76_RS06585 at 1384.410 kb on - strand, within BWI76_RS06585 at 1384.736 kb on + strand, within BWI76_RS06585 at 1384.774 kb on - strand, within BWI76_RS06585 at 1384.871 kb on + strand, within BWI76_RS06585 at 1385.137 kb on - strand, within BWI76_RS06585 at 1385.402 kb on + strand, within BWI76_RS06585 at 1385.526 kb on + strand, within BWI76_RS06585 at 1385.620 kb on + strand at 1385.860 kb on - strand at 1385.945 kb on - strand at 1385.947 kb on + strand, within BWI76_RS06590 at 1385.983 kb on + strand, within BWI76_RS06590 at 1386.152 kb on - strand, within BWI76_RS06590 at 1386.370 kb on + strand, within BWI76_RS06590 at 1386.572 kb on - strand, within BWI76_RS06590
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x remove 1,383,246 + BWI76_RS06575 0.89 +0.1 1,383,398 - -0.4 1,383,562 - BWI76_RS06580 0.19 +0.5 1,383,567 - BWI76_RS06580 0.20 -0.0 1,383,689 - BWI76_RS06580 0.47 +0.1 1,383,964 + +0.4 1,384,045 - +0.6 1,384,241 + BWI76_RS06585 0.15 +0.3 1,384,397 + BWI76_RS06585 0.24 +0.9 1,384,402 + BWI76_RS06585 0.24 +0.7 1,384,410 - BWI76_RS06585 0.24 +1.0 1,384,410 - BWI76_RS06585 0.24 +0.9 1,384,736 + BWI76_RS06585 0.43 +0.0 1,384,774 - BWI76_RS06585 0.45 -0.5 1,384,871 + BWI76_RS06585 0.50 +0.7 1,385,137 - BWI76_RS06585 0.65 +1.0 1,385,402 + BWI76_RS06585 0.80 +0.7 1,385,526 + BWI76_RS06585 0.87 +0.2 1,385,620 + +1.0 1,385,860 - +1.2 1,385,945 - +1.0 1,385,947 + BWI76_RS06590 0.12 +0.4 1,385,983 + BWI76_RS06590 0.14 +0.6 1,386,152 - BWI76_RS06590 0.23 +1.0 1,386,370 + BWI76_RS06590 0.35 +0.2 1,386,572 - BWI76_RS06590 0.47 +0.5
Or see this region's nucleotide sequence