Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06275 and BWI76_RS06280 overlap by 4 nucleotides BWI76_RS06280 and BWI76_RS06285 are separated by 47 nucleotides BWI76_RS06285 and BWI76_RS06290 are separated by 170 nucleotides
BWI76_RS06275: BWI76_RS06275 - beta-carotene 15,15'-monooxygenase, at 1,319,476 to 1,322,127
_RS06275
BWI76_RS06280: BWI76_RS06280 - hypothetical protein, at 1,322,124 to 1,323,518
_RS06280
BWI76_RS06285: BWI76_RS06285 - peroxiredoxin, at 1,323,566 to 1,324,168
_RS06285
BWI76_RS06290: BWI76_RS06290 - ACP phosphodiesterase, at 1,324,339 to 1,324,920
_RS06290
Position (kb)
1322
1323
1324 Strain fitness (log2 ratio)
-1
0
1
2 at 1321.305 kb on + strand, within BWI76_RS06275 at 1321.305 kb on + strand, within BWI76_RS06275 at 1321.532 kb on + strand, within BWI76_RS06275 at 1321.540 kb on - strand, within BWI76_RS06275 at 1321.611 kb on + strand, within BWI76_RS06275 at 1321.813 kb on + strand, within BWI76_RS06275 at 1321.893 kb on + strand at 1321.924 kb on - strand at 1321.959 kb on + strand at 1322.039 kb on + strand at 1322.152 kb on - strand at 1322.475 kb on - strand, within BWI76_RS06280 at 1322.707 kb on + strand, within BWI76_RS06280 at 1322.829 kb on + strand, within BWI76_RS06280 at 1322.888 kb on + strand, within BWI76_RS06280 at 1322.990 kb on - strand, within BWI76_RS06280 at 1323.360 kb on - strand, within BWI76_RS06280 at 1323.399 kb on + strand at 1323.696 kb on + strand, within BWI76_RS06285 at 1323.804 kb on - strand, within BWI76_RS06285 at 1323.832 kb on - strand, within BWI76_RS06285 at 1323.898 kb on + strand, within BWI76_RS06285 at 1323.906 kb on + strand, within BWI76_RS06285 at 1324.017 kb on - strand, within BWI76_RS06285 at 1324.044 kb on + strand, within BWI76_RS06285 at 1324.237 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x remove 1,321,305 + BWI76_RS06275 0.69 +0.2 1,321,305 + BWI76_RS06275 0.69 -0.2 1,321,532 + BWI76_RS06275 0.78 +0.2 1,321,540 - BWI76_RS06275 0.78 +0.1 1,321,611 + BWI76_RS06275 0.81 +1.5 1,321,813 + BWI76_RS06275 0.88 +1.7 1,321,893 + +0.0 1,321,924 - +0.3 1,321,959 + +0.6 1,322,039 + +1.8 1,322,152 - +0.1 1,322,475 - BWI76_RS06280 0.25 +0.3 1,322,707 + BWI76_RS06280 0.42 +0.6 1,322,829 + BWI76_RS06280 0.51 +0.5 1,322,888 + BWI76_RS06280 0.55 +0.0 1,322,990 - BWI76_RS06280 0.62 +1.4 1,323,360 - BWI76_RS06280 0.89 +0.7 1,323,399 + +0.2 1,323,696 + BWI76_RS06285 0.22 -0.2 1,323,804 - BWI76_RS06285 0.39 +0.4 1,323,832 - BWI76_RS06285 0.44 -0.1 1,323,898 + BWI76_RS06285 0.55 +0.7 1,323,906 + BWI76_RS06285 0.56 -0.9 1,324,017 - BWI76_RS06285 0.75 -0.0 1,324,044 + BWI76_RS06285 0.79 -0.1 1,324,237 - +0.5
Or see this region's nucleotide sequence