Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13220

Experiment: diet=StandardDiet; sample=FecalPellet; mouse2; day5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13210 and BBR_RS13215 are separated by 3 nucleotidesBBR_RS13215 and BBR_RS13220 are separated by 292 nucleotidesBBR_RS13220 and BBR_RS13225 are separated by 147 nucleotides BBR_RS13210: BBR_RS13210 - anion transporter, at 739,864 to 741,042 _RS13210 BBR_RS13215: BBR_RS13215 - hypothetical protein, at 741,046 to 741,267 _RS13215 BBR_RS13220: BBR_RS13220 - hypothetical protein, at 741,560 to 742,018 _RS13220 BBR_RS13225: BBR_RS13225 - MurR/RpiR family transcriptional regulator, at 742,166 to 743,035 _RS13225 Position (kb) 741 742 743Strain fitness (log2 ratio) -2 -1 0 1 2 3at 740.595 kb on + strand, within BBR_RS13210at 740.659 kb on + strand, within BBR_RS13210at 740.672 kb on - strand, within BBR_RS13210at 740.677 kb on + strand, within BBR_RS13210at 740.753 kb on - strand, within BBR_RS13210at 740.770 kb on - strand, within BBR_RS13210at 740.815 kb on - strand, within BBR_RS13210at 740.878 kb on - strand, within BBR_RS13210at 741.000 kb on + strandat 741.072 kb on - strand, within BBR_RS13215at 741.111 kb on - strand, within BBR_RS13215at 741.226 kb on + strand, within BBR_RS13215at 741.276 kb on + strandat 741.278 kb on + strandat 741.278 kb on + strandat 741.284 kb on - strandat 741.286 kb on - strandat 741.478 kb on + strandat 741.478 kb on + strandat 741.486 kb on - strandat 741.486 kb on - strandat 741.493 kb on - strandat 741.500 kb on + strandat 741.500 kb on + strandat 741.618 kb on + strand, within BBR_RS13220at 741.742 kb on + strand, within BBR_RS13220at 741.750 kb on - strand, within BBR_RS13220at 741.751 kb on - strand, within BBR_RS13220at 741.823 kb on + strand, within BBR_RS13220at 741.848 kb on - strand, within BBR_RS13220at 741.850 kb on - strand, within BBR_RS13220at 741.956 kb on + strand, within BBR_RS13220at 741.963 kb on + strand, within BBR_RS13220at 741.963 kb on + strand, within BBR_RS13220at 741.963 kb on + strand, within BBR_RS13220at 741.965 kb on + strand, within BBR_RS13220at 741.988 kb on - strandat 741.990 kb on - strandat 741.990 kb on - strandat 742.006 kb on - strandat 742.023 kb on - strandat 742.041 kb on - strandat 742.072 kb on + strandat 742.096 kb on - strandat 742.115 kb on + strandat 742.115 kb on + strandat 742.133 kb on - strandat 742.137 kb on + strandat 742.151 kb on - strandat 742.158 kb on + strandat 742.174 kb on - strandat 742.190 kb on - strandat 742.205 kb on + strandat 742.237 kb on - strandat 742.246 kb on + strandat 742.248 kb on + strandat 742.254 kb on - strand, within BBR_RS13225at 742.321 kb on + strand, within BBR_RS13225at 742.321 kb on + strand, within BBR_RS13225at 742.342 kb on - strand, within BBR_RS13225at 742.375 kb on + strand, within BBR_RS13225at 742.460 kb on + strand, within BBR_RS13225at 742.466 kb on - strand, within BBR_RS13225at 742.539 kb on - strand, within BBR_RS13225at 742.625 kb on - strand, within BBR_RS13225at 742.671 kb on - strand, within BBR_RS13225at 742.685 kb on + strand, within BBR_RS13225at 742.693 kb on - strand, within BBR_RS13225at 742.693 kb on - strand, within BBR_RS13225at 742.698 kb on - strand, within BBR_RS13225at 742.749 kb on - strand, within BBR_RS13225at 742.762 kb on + strand, within BBR_RS13225at 742.832 kb on + strand, within BBR_RS13225at 742.832 kb on + strand, within BBR_RS13225at 742.832 kb on + strand, within BBR_RS13225at 742.850 kb on + strand, within BBR_RS13225at 742.856 kb on + strand, within BBR_RS13225at 742.864 kb on - strand, within BBR_RS13225at 742.869 kb on + strand, within BBR_RS13225at 742.872 kb on - strand, within BBR_RS13225at 742.877 kb on - strand, within BBR_RS13225at 742.894 kb on - strand, within BBR_RS13225at 742.894 kb on - strand, within BBR_RS13225at 742.894 kb on - strand, within BBR_RS13225at 742.940 kb on + strand, within BBR_RS13225at 742.947 kb on - strand, within BBR_RS13225at 742.947 kb on - strand, within BBR_RS13225at 742.948 kb on - strand, within BBR_RS13225at 742.948 kb on - strand, within BBR_RS13225at 742.950 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse2; day5
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740,595 + BBR_RS13210 0.62 +1.3
740,659 + BBR_RS13210 0.67 +0.0
740,672 - BBR_RS13210 0.69 +0.4
740,677 + BBR_RS13210 0.69 -1.9
740,753 - BBR_RS13210 0.75 -0.5
740,770 - BBR_RS13210 0.77 +1.6
740,815 - BBR_RS13210 0.81 -0.7
740,878 - BBR_RS13210 0.86 +0.1
741,000 + -1.9
741,072 - BBR_RS13215 0.12 -1.9
741,111 - BBR_RS13215 0.29 -1.5
741,226 + BBR_RS13215 0.81 -0.4
741,276 + +1.1
741,278 + -1.1
741,278 + +0.2
741,284 - -1.4
741,286 - +0.2
741,478 + +1.2
741,478 + -0.4
741,486 - -0.1
741,486 - -0.5
741,493 - +0.6
741,500 + +0.6
741,500 + -1.8
741,618 + BBR_RS13220 0.13 -0.2
741,742 + BBR_RS13220 0.40 +0.8
741,750 - BBR_RS13220 0.41 -0.5
741,751 - BBR_RS13220 0.42 +0.8
741,823 + BBR_RS13220 0.57 +0.0
741,848 - BBR_RS13220 0.63 -0.4
741,850 - BBR_RS13220 0.63 +0.6
741,956 + BBR_RS13220 0.86 +0.8
741,963 + BBR_RS13220 0.88 +1.3
741,963 + BBR_RS13220 0.88 -1.1
741,963 + BBR_RS13220 0.88 +0.0
741,965 + BBR_RS13220 0.88 +0.6
741,988 - -0.3
741,990 - -0.4
741,990 - +0.7
742,006 - -0.8
742,023 - +1.9
742,041 - -0.1
742,072 + -0.1
742,096 - -0.0
742,115 + -0.4
742,115 + -0.7
742,133 - +0.4
742,137 + -0.7
742,151 - +1.8
742,158 + +0.3
742,174 - +0.2
742,190 - +0.3
742,205 + +0.1
742,237 - +0.8
742,246 + +1.5
742,248 + -1.0
742,254 - BBR_RS13225 0.10 +1.2
742,321 + BBR_RS13225 0.18 -1.8
742,321 + BBR_RS13225 0.18 +0.3
742,342 - BBR_RS13225 0.20 +0.7
742,375 + BBR_RS13225 0.24 -1.1
742,460 + BBR_RS13225 0.34 +2.2
742,466 - BBR_RS13225 0.34 +1.5
742,539 - BBR_RS13225 0.43 -0.9
742,625 - BBR_RS13225 0.53 +1.3
742,671 - BBR_RS13225 0.58 +0.2
742,685 + BBR_RS13225 0.60 +0.2
742,693 - BBR_RS13225 0.61 +0.5
742,693 - BBR_RS13225 0.61 +0.7
742,698 - BBR_RS13225 0.61 +0.5
742,749 - BBR_RS13225 0.67 +1.7
742,762 + BBR_RS13225 0.69 -1.0
742,832 + BBR_RS13225 0.77 +0.6
742,832 + BBR_RS13225 0.77 +1.0
742,832 + BBR_RS13225 0.77 -0.5
742,850 + BBR_RS13225 0.79 +0.1
742,856 + BBR_RS13225 0.79 -1.4
742,864 - BBR_RS13225 0.80 +0.2
742,869 + BBR_RS13225 0.81 -1.1
742,872 - BBR_RS13225 0.81 -0.6
742,877 - BBR_RS13225 0.82 +0.8
742,894 - BBR_RS13225 0.84 +2.3
742,894 - BBR_RS13225 0.84 +2.0
742,894 - BBR_RS13225 0.84 +1.5
742,940 + BBR_RS13225 0.89 +0.4
742,947 - BBR_RS13225 0.90 -2.2
742,947 - BBR_RS13225 0.90 +1.4
742,948 - BBR_RS13225 0.90 -0.6
742,948 - BBR_RS13225 0.90 +0.0
742,950 - +3.0

Or see this region's nucleotide sequence