Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26365 and RR42_RS26370 are separated by 26 nucleotides RR42_RS26370 and RR42_RS26375 are separated by 68 nucleotides RR42_RS26375 and RR42_RS26380 are separated by 460 nucleotides
RR42_RS26365: RR42_RS26365 - dienelactone hydrolase, at 1,272,523 to 1,273,341
_RS26365
RR42_RS26370: RR42_RS26370 - tautomerase, at 1,273,368 to 1,273,760
_RS26370
RR42_RS26375: RR42_RS26375 - hypothetical protein, at 1,273,829 to 1,274,275
_RS26375
RR42_RS26380: RR42_RS26380 - MFS transporter, at 1,274,736 to 1,276,031
_RS26380
Position (kb) 1273
1274 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1272.378 kb on - strand at 1272.726 kb on - strand, within RR42_RS26365 at 1272.726 kb on - strand, within RR42_RS26365 at 1273.145 kb on + strand, within RR42_RS26365 at 1273.145 kb on + strand, within RR42_RS26365 at 1273.558 kb on + strand, within RR42_RS26370 at 1273.558 kb on + strand, within RR42_RS26370 at 1273.878 kb on - strand, within RR42_RS26375 at 1274.046 kb on + strand, within RR42_RS26375 at 1274.046 kb on + strand, within RR42_RS26375 at 1274.047 kb on - strand, within RR42_RS26375 at 1274.047 kb on - strand, within RR42_RS26375 at 1274.187 kb on + strand, within RR42_RS26375 at 1274.187 kb on + strand, within RR42_RS26375 at 1274.187 kb on + strand, within RR42_RS26375 at 1274.187 kb on + strand, within RR42_RS26375 at 1274.188 kb on - strand, within RR42_RS26375 at 1274.188 kb on - strand, within RR42_RS26375 at 1274.188 kb on - strand, within RR42_RS26375 at 1274.242 kb on - strand at 1274.242 kb on - strand at 1274.242 kb on - strand at 1274.259 kb on + strand at 1274.259 kb on + strand at 1274.394 kb on - strand at 1274.479 kb on - strand at 1274.496 kb on + strand at 1274.497 kb on - strand at 1274.514 kb on + strand at 1274.692 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 1,272,378 - +1.9 1,272,726 - RR42_RS26365 0.25 +0.3 1,272,726 - RR42_RS26365 0.25 +1.9 1,273,145 + RR42_RS26365 0.76 -1.2 1,273,145 + RR42_RS26365 0.76 +0.1 1,273,558 + RR42_RS26370 0.48 -1.4 1,273,558 + RR42_RS26370 0.48 -0.2 1,273,878 - RR42_RS26375 0.11 +3.3 1,274,046 + RR42_RS26375 0.49 -0.6 1,274,046 + RR42_RS26375 0.49 -0.6 1,274,047 - RR42_RS26375 0.49 -0.3 1,274,047 - RR42_RS26375 0.49 +0.1 1,274,187 + RR42_RS26375 0.80 -1.9 1,274,187 + RR42_RS26375 0.80 -0.3 1,274,187 + RR42_RS26375 0.80 -0.4 1,274,187 + RR42_RS26375 0.80 +0.8 1,274,188 - RR42_RS26375 0.80 +1.1 1,274,188 - RR42_RS26375 0.80 -0.2 1,274,188 - RR42_RS26375 0.80 +0.2 1,274,242 - +0.2 1,274,242 - +1.6 1,274,242 - +1.0 1,274,259 + +0.4 1,274,259 + -0.7 1,274,394 - +0.1 1,274,479 - +0.2 1,274,496 + -0.3 1,274,497 - -0.6 1,274,514 + +0.2 1,274,692 + -0.7
Or see this region's nucleotide sequence