Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25190

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS25185 and RR42_RS25190 are separated by 171 nucleotidesRR42_RS25190 and RR42_RS25195 are separated by 66 nucleotides RR42_RS25185: RR42_RS25185 - epimerase, at 990,375 to 991,253 _RS25185 RR42_RS25190: RR42_RS25190 - acyl-CoA dehydrogenase, at 991,425 to 993,194 _RS25190 RR42_RS25195: RR42_RS25195 - AMP-dependent synthetase, at 993,261 to 994,934 _RS25195 Position (kb) 991 992 993 994Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 990.584 kb on - strand, within RR42_RS25185at 990.587 kb on + strand, within RR42_RS25185at 990.665 kb on - strand, within RR42_RS25185at 990.665 kb on - strand, within RR42_RS25185at 990.665 kb on - strand, within RR42_RS25185at 990.715 kb on - strand, within RR42_RS25185at 990.845 kb on + strand, within RR42_RS25185at 990.845 kb on + strand, within RR42_RS25185at 990.846 kb on - strand, within RR42_RS25185at 991.184 kb on + strandat 991.239 kb on - strandat 991.260 kb on + strandat 991.261 kb on - strandat 991.273 kb on + strandat 991.273 kb on + strandat 991.273 kb on + strandat 991.274 kb on - strandat 991.274 kb on - strandat 991.359 kb on + strandat 991.360 kb on - strandat 991.489 kb on - strandat 991.489 kb on - strandat 991.513 kb on + strandat 991.513 kb on + strandat 991.543 kb on + strandat 991.544 kb on - strandat 991.544 kb on - strandat 991.544 kb on - strandat 991.609 kb on - strand, within RR42_RS25190at 991.609 kb on - strand, within RR42_RS25190at 991.636 kb on + strand, within RR42_RS25190at 991.636 kb on + strand, within RR42_RS25190at 991.636 kb on + strand, within RR42_RS25190at 991.637 kb on - strand, within RR42_RS25190at 991.637 kb on - strand, within RR42_RS25190at 991.689 kb on + strand, within RR42_RS25190at 991.689 kb on + strand, within RR42_RS25190at 991.689 kb on + strand, within RR42_RS25190at 991.899 kb on - strand, within RR42_RS25190at 991.932 kb on - strand, within RR42_RS25190at 991.941 kb on - strand, within RR42_RS25190at 991.941 kb on - strand, within RR42_RS25190at 991.942 kb on + strand, within RR42_RS25190at 991.943 kb on - strand, within RR42_RS25190at 991.943 kb on - strand, within RR42_RS25190at 991.943 kb on - strand, within RR42_RS25190at 991.943 kb on - strand, within RR42_RS25190at 992.012 kb on + strand, within RR42_RS25190at 992.137 kb on + strand, within RR42_RS25190at 992.137 kb on + strand, within RR42_RS25190at 992.137 kb on + strand, within RR42_RS25190at 992.137 kb on + strand, within RR42_RS25190at 992.138 kb on - strand, within RR42_RS25190at 992.138 kb on - strand, within RR42_RS25190at 992.159 kb on + strand, within RR42_RS25190at 992.269 kb on + strand, within RR42_RS25190at 992.375 kb on - strand, within RR42_RS25190at 992.628 kb on + strand, within RR42_RS25190at 992.629 kb on - strand, within RR42_RS25190at 992.629 kb on - strand, within RR42_RS25190at 992.752 kb on + strand, within RR42_RS25190at 992.752 kb on + strand, within RR42_RS25190at 992.753 kb on - strand, within RR42_RS25190at 992.797 kb on + strand, within RR42_RS25190at 992.797 kb on + strand, within RR42_RS25190at 992.798 kb on - strand, within RR42_RS25190at 992.841 kb on - strand, within RR42_RS25190at 992.854 kb on - strand, within RR42_RS25190at 992.953 kb on + strand, within RR42_RS25190at 992.953 kb on + strand, within RR42_RS25190at 993.078 kb on + strandat 993.079 kb on - strandat 993.184 kb on + strandat 993.184 kb on + strandat 993.185 kb on - strandat 993.185 kb on - strandat 993.185 kb on - strandat 993.187 kb on + strandat 993.188 kb on - strandat 993.188 kb on - strandat 993.188 kb on - strandat 993.195 kb on - strandat 993.195 kb on - strandat 993.263 kb on - strandat 993.353 kb on + strandat 993.353 kb on + strandat 993.372 kb on - strandat 993.372 kb on - strandat 993.869 kb on - strand, within RR42_RS25195at 993.869 kb on - strand, within RR42_RS25195at 993.973 kb on - strand, within RR42_RS25195at 994.151 kb on + strand, within RR42_RS25195at 994.151 kb on + strand, within RR42_RS25195at 994.152 kb on - strand, within RR42_RS25195at 994.156 kb on + strand, within RR42_RS25195at 994.156 kb on + strand, within RR42_RS25195at 994.156 kb on + strand, within RR42_RS25195

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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990,584 - RR42_RS25185 0.24 -0.9
990,587 + RR42_RS25185 0.24 -0.1
990,665 - RR42_RS25185 0.33 -2.0
990,665 - RR42_RS25185 0.33 -1.8
990,665 - RR42_RS25185 0.33 -1.5
990,715 - RR42_RS25185 0.39 -0.4
990,845 + RR42_RS25185 0.53 +0.7
990,845 + RR42_RS25185 0.53 -0.9
990,846 - RR42_RS25185 0.54 -1.0
991,184 + +0.4
991,239 - -0.4
991,260 + -0.9
991,261 - -0.3
991,273 + +0.4
991,273 + -0.1
991,273 + +0.8
991,274 - -1.0
991,274 - +0.4
991,359 + +1.2
991,360 - -0.0
991,489 - +0.4
991,489 - -1.3
991,513 + +0.3
991,513 + -0.1
991,543 + +2.5
991,544 - +1.2
991,544 - -1.5
991,544 - +1.3
991,609 - RR42_RS25190 0.10 +0.3
991,609 - RR42_RS25190 0.10 +0.8
991,636 + RR42_RS25190 0.12 -0.0
991,636 + RR42_RS25190 0.12 +1.3
991,636 + RR42_RS25190 0.12 +0.4
991,637 - RR42_RS25190 0.12 +0.5
991,637 - RR42_RS25190 0.12 -0.3
991,689 + RR42_RS25190 0.15 +0.3
991,689 + RR42_RS25190 0.15 +0.1
991,689 + RR42_RS25190 0.15 -1.0
991,899 - RR42_RS25190 0.27 +1.1
991,932 - RR42_RS25190 0.29 -2.2
991,941 - RR42_RS25190 0.29 -0.4
991,941 - RR42_RS25190 0.29 -0.7
991,942 + RR42_RS25190 0.29 -1.1
991,943 - RR42_RS25190 0.29 +0.4
991,943 - RR42_RS25190 0.29 -0.0
991,943 - RR42_RS25190 0.29 +1.6
991,943 - RR42_RS25190 0.29 -1.7
992,012 + RR42_RS25190 0.33 +2.2
992,137 + RR42_RS25190 0.40 -1.1
992,137 + RR42_RS25190 0.40 +0.6
992,137 + RR42_RS25190 0.40 -0.5
992,137 + RR42_RS25190 0.40 -0.2
992,138 - RR42_RS25190 0.40 +0.8
992,138 - RR42_RS25190 0.40 +0.3
992,159 + RR42_RS25190 0.41 +0.6
992,269 + RR42_RS25190 0.48 +0.2
992,375 - RR42_RS25190 0.54 -0.8
992,628 + RR42_RS25190 0.68 +2.1
992,629 - RR42_RS25190 0.68 +1.4
992,629 - RR42_RS25190 0.68 -0.2
992,752 + RR42_RS25190 0.75 +1.0
992,752 + RR42_RS25190 0.75 -1.2
992,753 - RR42_RS25190 0.75 +0.1
992,797 + RR42_RS25190 0.78 -2.4
992,797 + RR42_RS25190 0.78 -0.0
992,798 - RR42_RS25190 0.78 +0.7
992,841 - RR42_RS25190 0.80 -0.5
992,854 - RR42_RS25190 0.81 -2.0
992,953 + RR42_RS25190 0.86 +0.3
992,953 + RR42_RS25190 0.86 -0.3
993,078 + -1.1
993,079 - +0.9
993,184 + -0.1
993,184 + +0.3
993,185 - -0.4
993,185 - +0.4
993,185 - -0.6
993,187 + -0.2
993,188 - +0.6
993,188 - -0.3
993,188 - -1.6
993,195 - -1.5
993,195 - -0.2
993,263 - -1.7
993,353 + +0.0
993,353 + -1.3
993,372 - +0.1
993,372 - +1.0
993,869 - RR42_RS25195 0.36 +0.3
993,869 - RR42_RS25195 0.36 -0.9
993,973 - RR42_RS25195 0.43 -1.3
994,151 + RR42_RS25195 0.53 -0.1
994,151 + RR42_RS25195 0.53 -0.7
994,152 - RR42_RS25195 0.53 -1.8
994,156 + RR42_RS25195 0.53 +0.4
994,156 + RR42_RS25195 0.53 +1.9
994,156 + RR42_RS25195 0.53 -3.1

Or see this region's nucleotide sequence