Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23705 and RR42_RS23710 are separated by 40 nucleotides RR42_RS23710 and RR42_RS23715 are separated by 216 nucleotides RR42_RS23715 and RR42_RS23720 are separated by 206 nucleotides
RR42_RS23705: RR42_RS23705 - cyclohexanecarboxylate--CoA ligase, at 644,225 to 645,877
_RS23705
RR42_RS23710: RR42_RS23710 - enoyl-CoA hydratase, at 645,918 to 646,667
_RS23710
RR42_RS23715: RR42_RS23715 - amino acid ABC transporter permease, at 646,884 to 647,207
_RS23715
RR42_RS23720: RR42_RS23720 - hypothetical protein, at 647,414 to 648,286
_RS23720
Position (kb) 645
646
647 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 644.969 kb on + strand, within RR42_RS23705 at 644.969 kb on + strand, within RR42_RS23705 at 644.969 kb on + strand, within RR42_RS23705 at 644.970 kb on - strand, within RR42_RS23705 at 644.970 kb on - strand, within RR42_RS23705 at 644.970 kb on - strand, within RR42_RS23705 at 644.970 kb on - strand, within RR42_RS23705 at 645.043 kb on - strand, within RR42_RS23705 at 645.590 kb on + strand, within RR42_RS23705 at 645.591 kb on - strand, within RR42_RS23705 at 645.746 kb on + strand at 645.746 kb on + strand at 645.746 kb on + strand at 645.746 kb on + strand at 645.746 kb on + strand at 645.747 kb on - strand at 645.747 kb on - strand at 645.907 kb on + strand at 646.113 kb on + strand, within RR42_RS23710 at 646.113 kb on + strand, within RR42_RS23710 at 646.114 kb on - strand, within RR42_RS23710 at 646.114 kb on - strand, within RR42_RS23710 at 646.115 kb on + strand, within RR42_RS23710 at 646.115 kb on + strand, within RR42_RS23710 at 646.115 kb on + strand, within RR42_RS23710 at 646.115 kb on + strand, within RR42_RS23710 at 646.115 kb on + strand, within RR42_RS23710 at 646.115 kb on + strand, within RR42_RS23710 at 646.137 kb on + strand, within RR42_RS23710 at 646.137 kb on + strand, within RR42_RS23710 at 646.138 kb on - strand, within RR42_RS23710 at 646.138 kb on - strand, within RR42_RS23710 at 646.138 kb on - strand, within RR42_RS23710 at 646.420 kb on + strand, within RR42_RS23710 at 646.420 kb on + strand, within RR42_RS23710 at 646.666 kb on - strand at 646.789 kb on + strand at 646.789 kb on + strand at 646.790 kb on - strand at 646.792 kb on + strand at 646.793 kb on - strand at 646.803 kb on + strand at 646.902 kb on - strand at 646.974 kb on + strand, within RR42_RS23715 at 646.975 kb on - strand, within RR42_RS23715 at 647.010 kb on + strand, within RR42_RS23715 at 647.010 kb on + strand, within RR42_RS23715 at 647.011 kb on - strand, within RR42_RS23715 at 647.011 kb on - strand, within RR42_RS23715 at 647.011 kb on - strand, within RR42_RS23715 at 647.047 kb on - strand, within RR42_RS23715 at 647.048 kb on + strand, within RR42_RS23715 at 647.048 kb on + strand, within RR42_RS23715 at 647.159 kb on + strand, within RR42_RS23715 at 647.160 kb on - strand, within RR42_RS23715 at 647.160 kb on - strand, within RR42_RS23715 at 647.160 kb on - strand, within RR42_RS23715 at 647.517 kb on + strand, within RR42_RS23720 at 647.518 kb on - strand, within RR42_RS23720 at 647.563 kb on + strand, within RR42_RS23720 at 647.564 kb on - strand, within RR42_RS23720 at 647.605 kb on - strand, within RR42_RS23720 at 647.616 kb on - strand, within RR42_RS23720
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 644,969 + RR42_RS23705 0.45 +0.7 644,969 + RR42_RS23705 0.45 +0.4 644,969 + RR42_RS23705 0.45 +0.2 644,970 - RR42_RS23705 0.45 -0.1 644,970 - RR42_RS23705 0.45 -1.9 644,970 - RR42_RS23705 0.45 +1.2 644,970 - RR42_RS23705 0.45 -2.0 645,043 - RR42_RS23705 0.49 +1.3 645,590 + RR42_RS23705 0.83 -1.1 645,591 - RR42_RS23705 0.83 -0.5 645,746 + -0.8 645,746 + +0.6 645,746 + +0.4 645,746 + +0.8 645,746 + -0.9 645,747 - +0.4 645,747 - +0.5 645,907 + -1.1 646,113 + RR42_RS23710 0.26 -1.5 646,113 + RR42_RS23710 0.26 -0.2 646,114 - RR42_RS23710 0.26 +0.6 646,114 - RR42_RS23710 0.26 -0.7 646,115 + RR42_RS23710 0.26 -0.2 646,115 + RR42_RS23710 0.26 +0.0 646,115 + RR42_RS23710 0.26 +1.9 646,115 + RR42_RS23710 0.26 +1.0 646,115 + RR42_RS23710 0.26 +0.0 646,115 + RR42_RS23710 0.26 -0.2 646,137 + RR42_RS23710 0.29 -0.2 646,137 + RR42_RS23710 0.29 -0.0 646,138 - RR42_RS23710 0.29 +3.3 646,138 - RR42_RS23710 0.29 +0.7 646,138 - RR42_RS23710 0.29 +0.6 646,420 + RR42_RS23710 0.67 -1.1 646,420 + RR42_RS23710 0.67 -0.8 646,666 - +1.7 646,789 + +1.5 646,789 + -0.5 646,790 - -1.3 646,792 + +1.2 646,793 - -1.5 646,803 + +1.7 646,902 - -2.1 646,974 + RR42_RS23715 0.28 -0.0 646,975 - RR42_RS23715 0.28 -1.0 647,010 + RR42_RS23715 0.39 -1.3 647,010 + RR42_RS23715 0.39 -1.1 647,011 - RR42_RS23715 0.39 -1.3 647,011 - RR42_RS23715 0.39 +0.1 647,011 - RR42_RS23715 0.39 +0.1 647,047 - RR42_RS23715 0.50 -1.6 647,048 + RR42_RS23715 0.51 -1.9 647,048 + RR42_RS23715 0.51 -2.0 647,159 + RR42_RS23715 0.85 +0.1 647,160 - RR42_RS23715 0.85 -1.7 647,160 - RR42_RS23715 0.85 +0.6 647,160 - RR42_RS23715 0.85 +0.4 647,517 + RR42_RS23720 0.12 -0.8 647,518 - RR42_RS23720 0.12 +0.7 647,563 + RR42_RS23720 0.17 +1.9 647,564 - RR42_RS23720 0.17 -1.0 647,605 - RR42_RS23720 0.22 -0.5 647,616 - RR42_RS23720 0.23 +0.1
Or see this region's nucleotide sequence