Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23695

Experiment: adipate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS23685 and RR42_RS23690 are separated by 132 nucleotidesRR42_RS23690 and RR42_RS23695 are separated by 85 nucleotidesRR42_RS23695 and RR42_RS23700 are separated by 99 nucleotides RR42_RS23685: RR42_RS23685 - transcriptional regulator, at 640,633 to 641,154 _RS23685 RR42_RS23690: RR42_RS23690 - 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase, at 641,287 to 642,054 _RS23690 RR42_RS23695: RR42_RS23695 - dihydroxynaphthoic acid synthetase, at 642,140 to 642,922 _RS23695 RR42_RS23700: RR42_RS23700 - acyl-CoA dehydrogenase, at 643,022 to 644,173 _RS23700 Position (kb) 642 643Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 641.145 kb on + strandat 641.154 kb on + strandat 641.245 kb on - strandat 641.543 kb on + strand, within RR42_RS23690at 641.544 kb on - strand, within RR42_RS23690at 641.584 kb on - strand, within RR42_RS23690at 641.749 kb on + strand, within RR42_RS23690at 641.872 kb on + strand, within RR42_RS23690at 641.873 kb on - strand, within RR42_RS23690at 642.146 kb on + strandat 642.146 kb on + strandat 642.147 kb on - strandat 642.161 kb on + strandat 642.162 kb on - strandat 642.272 kb on + strand, within RR42_RS23695at 642.273 kb on - strand, within RR42_RS23695at 642.362 kb on + strand, within RR42_RS23695at 642.363 kb on - strand, within RR42_RS23695at 642.456 kb on - strand, within RR42_RS23695at 642.623 kb on + strand, within RR42_RS23695at 642.623 kb on + strand, within RR42_RS23695at 642.623 kb on + strand, within RR42_RS23695at 642.624 kb on - strand, within RR42_RS23695at 642.624 kb on - strand, within RR42_RS23695at 642.625 kb on + strand, within RR42_RS23695at 642.625 kb on + strand, within RR42_RS23695at 642.625 kb on + strand, within RR42_RS23695at 642.625 kb on + strand, within RR42_RS23695at 642.625 kb on + strand, within RR42_RS23695at 642.626 kb on - strand, within RR42_RS23695at 642.626 kb on - strand, within RR42_RS23695at 642.626 kb on - strand, within RR42_RS23695at 642.626 kb on - strand, within RR42_RS23695at 642.626 kb on - strand, within RR42_RS23695at 642.626 kb on - strand, within RR42_RS23695at 642.626 kb on - strand, within RR42_RS23695at 642.824 kb on + strand, within RR42_RS23695at 642.825 kb on - strand, within RR42_RS23695at 642.825 kb on - strand, within RR42_RS23695at 642.825 kb on - strand, within RR42_RS23695at 642.839 kb on + strand, within RR42_RS23695at 642.839 kb on + strand, within RR42_RS23695at 642.839 kb on + strand, within RR42_RS23695at 642.839 kb on + strand, within RR42_RS23695at 642.842 kb on + strand, within RR42_RS23695at 642.842 kb on + strand, within RR42_RS23695at 642.911 kb on + strandat 642.920 kb on + strandat 642.931 kb on - strandat 643.032 kb on - strandat 643.032 kb on - strandat 643.090 kb on + strandat 643.171 kb on + strand, within RR42_RS23700at 643.172 kb on - strand, within RR42_RS23700at 643.172 kb on - strand, within RR42_RS23700at 643.274 kb on + strand, within RR42_RS23700at 643.274 kb on + strand, within RR42_RS23700at 643.274 kb on + strand, within RR42_RS23700at 643.274 kb on + strand, within RR42_RS23700at 643.274 kb on + strand, within RR42_RS23700at 643.274 kb on + strand, within RR42_RS23700at 643.275 kb on - strand, within RR42_RS23700at 643.275 kb on - strand, within RR42_RS23700at 643.460 kb on + strand, within RR42_RS23700at 643.460 kb on + strand, within RR42_RS23700at 643.460 kb on + strand, within RR42_RS23700at 643.460 kb on + strand, within RR42_RS23700at 643.461 kb on - strand, within RR42_RS23700at 643.767 kb on + strand, within RR42_RS23700at 643.808 kb on + strand, within RR42_RS23700at 643.808 kb on + strand, within RR42_RS23700at 643.808 kb on + strand, within RR42_RS23700at 643.808 kb on + strand, within RR42_RS23700at 643.809 kb on - strand, within RR42_RS23700at 643.809 kb on - strand, within RR42_RS23700at 643.809 kb on - strand, within RR42_RS23700

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
remove
641,145 + -1.2
641,154 + -2.0
641,245 - +1.2
641,543 + RR42_RS23690 0.33 +0.4
641,544 - RR42_RS23690 0.33 +0.7
641,584 - RR42_RS23690 0.39 +4.3
641,749 + RR42_RS23690 0.60 -0.6
641,872 + RR42_RS23690 0.76 -1.7
641,873 - RR42_RS23690 0.76 +3.0
642,146 + +1.1
642,146 + -0.2
642,147 - -1.1
642,161 + -1.6
642,162 - +0.6
642,272 + RR42_RS23695 0.17 +0.2
642,273 - RR42_RS23695 0.17 -1.5
642,362 + RR42_RS23695 0.28 -1.7
642,363 - RR42_RS23695 0.28 +0.3
642,456 - RR42_RS23695 0.40 -1.4
642,623 + RR42_RS23695 0.62 +1.7
642,623 + RR42_RS23695 0.62 +0.2
642,623 + RR42_RS23695 0.62 +0.7
642,624 - RR42_RS23695 0.62 -0.7
642,624 - RR42_RS23695 0.62 -0.9
642,625 + RR42_RS23695 0.62 -1.5
642,625 + RR42_RS23695 0.62 +0.5
642,625 + RR42_RS23695 0.62 -0.2
642,625 + RR42_RS23695 0.62 +1.0
642,625 + RR42_RS23695 0.62 -0.9
642,626 - RR42_RS23695 0.62 +0.3
642,626 - RR42_RS23695 0.62 -0.9
642,626 - RR42_RS23695 0.62 +0.2
642,626 - RR42_RS23695 0.62 -0.1
642,626 - RR42_RS23695 0.62 +0.2
642,626 - RR42_RS23695 0.62 -0.4
642,626 - RR42_RS23695 0.62 +0.7
642,824 + RR42_RS23695 0.87 -0.9
642,825 - RR42_RS23695 0.87 +0.6
642,825 - RR42_RS23695 0.87 -0.2
642,825 - RR42_RS23695 0.87 -0.2
642,839 + RR42_RS23695 0.89 -1.4
642,839 + RR42_RS23695 0.89 -0.9
642,839 + RR42_RS23695 0.89 -0.7
642,839 + RR42_RS23695 0.89 +0.9
642,842 + RR42_RS23695 0.90 -1.1
642,842 + RR42_RS23695 0.90 -1.2
642,911 + +0.2
642,920 + -0.1
642,931 - -0.4
643,032 - +0.2
643,032 - -0.1
643,090 + -0.6
643,171 + RR42_RS23700 0.13 -0.1
643,172 - RR42_RS23700 0.13 +0.9
643,172 - RR42_RS23700 0.13 -0.1
643,274 + RR42_RS23700 0.22 +1.0
643,274 + RR42_RS23700 0.22 -0.7
643,274 + RR42_RS23700 0.22 -2.7
643,274 + RR42_RS23700 0.22 -0.4
643,274 + RR42_RS23700 0.22 +1.1
643,274 + RR42_RS23700 0.22 -0.7
643,275 - RR42_RS23700 0.22 -0.2
643,275 - RR42_RS23700 0.22 -0.0
643,460 + RR42_RS23700 0.38 -0.7
643,460 + RR42_RS23700 0.38 +0.2
643,460 + RR42_RS23700 0.38 -0.5
643,460 + RR42_RS23700 0.38 +0.0
643,461 - RR42_RS23700 0.38 -1.6
643,767 + RR42_RS23700 0.65 -1.4
643,808 + RR42_RS23700 0.68 +0.0
643,808 + RR42_RS23700 0.68 -2.3
643,808 + RR42_RS23700 0.68 -1.5
643,808 + RR42_RS23700 0.68 -0.7
643,809 - RR42_RS23700 0.68 -0.6
643,809 - RR42_RS23700 0.68 -0.6
643,809 - RR42_RS23700 0.68 +0.4

Or see this region's nucleotide sequence