Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20230 and RR42_RS20235 are separated by 266 nucleotides RR42_RS20235 and RR42_RS20240 are separated by 10 nucleotides
RR42_RS20230: RR42_RS20230 - LysR family transcriptional regulator, at 4,375,341 to 4,376,285
_RS20230
RR42_RS20235: RR42_RS20235 - metal-dependent hydrolase, at 4,376,552 to 4,377,295
_RS20235
RR42_RS20240: RR42_RS20240 - hypothetical protein, at 4,377,306 to 4,379,093
_RS20240
Position (kb) 4376
4377
4378 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4375.660 kb on + strand, within RR42_RS20230 at 4375.661 kb on - strand, within RR42_RS20230 at 4375.661 kb on - strand, within RR42_RS20230 at 4375.661 kb on - strand, within RR42_RS20230 at 4375.818 kb on + strand, within RR42_RS20230 at 4375.819 kb on - strand, within RR42_RS20230 at 4375.929 kb on + strand, within RR42_RS20230 at 4375.930 kb on - strand, within RR42_RS20230 at 4375.930 kb on - strand, within RR42_RS20230 at 4375.966 kb on + strand, within RR42_RS20230 at 4375.966 kb on + strand, within RR42_RS20230 at 4375.968 kb on + strand, within RR42_RS20230 at 4375.969 kb on - strand, within RR42_RS20230 at 4375.969 kb on - strand, within RR42_RS20230 at 4375.969 kb on - strand, within RR42_RS20230 at 4376.055 kb on - strand, within RR42_RS20230 at 4376.289 kb on + strand at 4376.289 kb on + strand at 4376.296 kb on + strand at 4376.296 kb on + strand at 4376.554 kb on - strand at 4376.580 kb on + strand at 4376.580 kb on + strand at 4376.658 kb on + strand, within RR42_RS20235 at 4376.658 kb on + strand, within RR42_RS20235 at 4376.659 kb on - strand, within RR42_RS20235 at 4376.872 kb on + strand, within RR42_RS20235 at 4376.873 kb on - strand, within RR42_RS20235 at 4376.919 kb on + strand, within RR42_RS20235 at 4376.919 kb on + strand, within RR42_RS20235 at 4376.920 kb on - strand, within RR42_RS20235 at 4377.099 kb on + strand, within RR42_RS20235 at 4377.255 kb on + strand at 4377.287 kb on - strand at 4377.308 kb on - strand at 4377.325 kb on + strand at 4377.325 kb on + strand at 4377.386 kb on + strand at 4377.518 kb on - strand, within RR42_RS20240 at 4377.543 kb on + strand, within RR42_RS20240 at 4377.543 kb on + strand, within RR42_RS20240 at 4377.544 kb on - strand, within RR42_RS20240 at 4377.544 kb on - strand, within RR42_RS20240 at 4377.631 kb on + strand, within RR42_RS20240 at 4377.631 kb on + strand, within RR42_RS20240 at 4377.631 kb on + strand, within RR42_RS20240 at 4377.631 kb on + strand, within RR42_RS20240 at 4377.631 kb on + strand, within RR42_RS20240 at 4377.632 kb on - strand, within RR42_RS20240 at 4377.632 kb on - strand, within RR42_RS20240 at 4377.632 kb on - strand, within RR42_RS20240 at 4377.632 kb on - strand, within RR42_RS20240 at 4377.632 kb on - strand, within RR42_RS20240 at 4377.632 kb on - strand, within RR42_RS20240 at 4377.632 kb on - strand, within RR42_RS20240 at 4377.889 kb on + strand, within RR42_RS20240 at 4377.889 kb on + strand, within RR42_RS20240 at 4377.890 kb on - strand, within RR42_RS20240 at 4378.187 kb on - strand, within RR42_RS20240
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 4,375,660 + RR42_RS20230 0.34 +0.1 4,375,661 - RR42_RS20230 0.34 -0.4 4,375,661 - RR42_RS20230 0.34 -0.2 4,375,661 - RR42_RS20230 0.34 +0.3 4,375,818 + RR42_RS20230 0.50 +0.6 4,375,819 - RR42_RS20230 0.51 -0.1 4,375,929 + RR42_RS20230 0.62 -0.9 4,375,930 - RR42_RS20230 0.62 +1.2 4,375,930 - RR42_RS20230 0.62 -0.8 4,375,966 + RR42_RS20230 0.66 -0.2 4,375,966 + RR42_RS20230 0.66 +0.4 4,375,968 + RR42_RS20230 0.66 -0.6 4,375,969 - RR42_RS20230 0.66 -0.5 4,375,969 - RR42_RS20230 0.66 -0.6 4,375,969 - RR42_RS20230 0.66 -0.2 4,376,055 - RR42_RS20230 0.76 +1.7 4,376,289 + +1.5 4,376,289 + +0.0 4,376,296 + +0.9 4,376,296 + +0.9 4,376,554 - -0.0 4,376,580 + -0.3 4,376,580 + +1.4 4,376,658 + RR42_RS20235 0.14 -1.4 4,376,658 + RR42_RS20235 0.14 -1.9 4,376,659 - RR42_RS20235 0.14 -0.9 4,376,872 + RR42_RS20235 0.43 +1.4 4,376,873 - RR42_RS20235 0.43 -0.0 4,376,919 + RR42_RS20235 0.49 -1.0 4,376,919 + RR42_RS20235 0.49 +0.2 4,376,920 - RR42_RS20235 0.49 -1.1 4,377,099 + RR42_RS20235 0.74 -1.9 4,377,255 + -0.7 4,377,287 - -0.6 4,377,308 - -0.1 4,377,325 + +0.1 4,377,325 + -0.9 4,377,386 + +0.7 4,377,518 - RR42_RS20240 0.12 +0.9 4,377,543 + RR42_RS20240 0.13 +0.2 4,377,543 + RR42_RS20240 0.13 +0.1 4,377,544 - RR42_RS20240 0.13 -0.4 4,377,544 - RR42_RS20240 0.13 -0.1 4,377,631 + RR42_RS20240 0.18 -0.8 4,377,631 + RR42_RS20240 0.18 -1.4 4,377,631 + RR42_RS20240 0.18 +1.2 4,377,631 + RR42_RS20240 0.18 +1.3 4,377,631 + RR42_RS20240 0.18 -0.2 4,377,632 - RR42_RS20240 0.18 -0.7 4,377,632 - RR42_RS20240 0.18 +0.2 4,377,632 - RR42_RS20240 0.18 -1.4 4,377,632 - RR42_RS20240 0.18 +0.6 4,377,632 - RR42_RS20240 0.18 +0.5 4,377,632 - RR42_RS20240 0.18 -0.8 4,377,632 - RR42_RS20240 0.18 -0.5 4,377,889 + RR42_RS20240 0.33 -3.1 4,377,889 + RR42_RS20240 0.33 +1.0 4,377,890 - RR42_RS20240 0.33 -1.0 4,378,187 - RR42_RS20240 0.49 +0.7
Or see this region's nucleotide sequence