Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS09190 and RR42_RS09195 are separated by 145 nucleotides RR42_RS09195 and RR42_RS09200 are separated by 602 nucleotides
RR42_RS09190: RR42_RS09190 - DNA-binding protein, at 1,941,950 to 1,943,401
_RS09190
RR42_RS09195: RR42_RS09195 - short-chain dehydrogenase, at 1,943,547 to 1,944,761
_RS09195
RR42_RS09200: RR42_RS09200 - membrane protein, at 1,945,364 to 1,946,965
_RS09200
Position (kb) 1943
1944
1945 Strain fitness (log2 ratio) -2
-1
0
1 at 1942.651 kb on - strand, within RR42_RS09190 at 1942.651 kb on - strand, within RR42_RS09190 at 1942.651 kb on - strand, within RR42_RS09190 at 1942.713 kb on + strand, within RR42_RS09190 at 1942.713 kb on + strand, within RR42_RS09190 at 1942.713 kb on + strand, within RR42_RS09190 at 1942.714 kb on - strand, within RR42_RS09190 at 1942.714 kb on - strand, within RR42_RS09190 at 1942.714 kb on - strand, within RR42_RS09190 at 1942.871 kb on + strand, within RR42_RS09190 at 1942.896 kb on + strand, within RR42_RS09190 at 1942.917 kb on - strand, within RR42_RS09190 at 1942.945 kb on - strand, within RR42_RS09190 at 1942.973 kb on + strand, within RR42_RS09190 at 1942.993 kb on + strand, within RR42_RS09190 at 1943.349 kb on + strand at 1943.606 kb on - strand at 1943.663 kb on - strand at 1943.663 kb on - strand at 1943.908 kb on + strand, within RR42_RS09195 at 1943.908 kb on + strand, within RR42_RS09195 at 1943.908 kb on + strand, within RR42_RS09195 at 1943.908 kb on + strand, within RR42_RS09195 at 1943.908 kb on + strand, within RR42_RS09195 at 1943.909 kb on - strand, within RR42_RS09195 at 1943.909 kb on - strand, within RR42_RS09195 at 1944.299 kb on - strand, within RR42_RS09195 at 1944.610 kb on + strand, within RR42_RS09195 at 1944.611 kb on - strand, within RR42_RS09195 at 1944.611 kb on - strand, within RR42_RS09195 at 1944.611 kb on - strand, within RR42_RS09195 at 1944.664 kb on + strand at 1944.664 kb on + strand at 1944.664 kb on + strand at 1944.664 kb on + strand at 1944.665 kb on - strand at 1944.665 kb on - strand at 1944.665 kb on - strand at 1944.707 kb on - strand at 1945.063 kb on + strand at 1945.066 kb on + strand at 1945.067 kb on - strand at 1945.087 kb on + strand at 1945.113 kb on - strand at 1945.192 kb on + strand at 1945.192 kb on + strand at 1945.193 kb on - strand at 1945.193 kb on - strand at 1945.387 kb on - strand at 1945.559 kb on + strand, within RR42_RS09200
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 1,942,651 - RR42_RS09190 0.48 -1.2 1,942,651 - RR42_RS09190 0.48 +0.8 1,942,651 - RR42_RS09190 0.48 +0.8 1,942,713 + RR42_RS09190 0.53 -0.5 1,942,713 + RR42_RS09190 0.53 +0.5 1,942,713 + RR42_RS09190 0.53 -1.1 1,942,714 - RR42_RS09190 0.53 -1.8 1,942,714 - RR42_RS09190 0.53 -1.4 1,942,714 - RR42_RS09190 0.53 +0.9 1,942,871 + RR42_RS09190 0.63 +1.6 1,942,896 + RR42_RS09190 0.65 -0.6 1,942,917 - RR42_RS09190 0.67 +0.5 1,942,945 - RR42_RS09190 0.69 -0.5 1,942,973 + RR42_RS09190 0.70 +0.1 1,942,993 + RR42_RS09190 0.72 -0.5 1,943,349 + +0.8 1,943,606 - -1.4 1,943,663 - +0.4 1,943,663 - +0.1 1,943,908 + RR42_RS09195 0.30 -0.6 1,943,908 + RR42_RS09195 0.30 -0.3 1,943,908 + RR42_RS09195 0.30 -0.2 1,943,908 + RR42_RS09195 0.30 -1.0 1,943,908 + RR42_RS09195 0.30 -0.4 1,943,909 - RR42_RS09195 0.30 -1.3 1,943,909 - RR42_RS09195 0.30 +0.7 1,944,299 - RR42_RS09195 0.62 +0.1 1,944,610 + RR42_RS09195 0.87 -0.2 1,944,611 - RR42_RS09195 0.88 -1.2 1,944,611 - RR42_RS09195 0.88 -0.2 1,944,611 - RR42_RS09195 0.88 -0.3 1,944,664 + -0.6 1,944,664 + -2.5 1,944,664 + +1.2 1,944,664 + -2.6 1,944,665 - +1.0 1,944,665 - -1.2 1,944,665 - +0.4 1,944,707 - -0.1 1,945,063 + -2.2 1,945,066 + -1.1 1,945,067 - -2.3 1,945,087 + -0.9 1,945,113 - +0.8 1,945,192 + +0.0 1,945,192 + -0.2 1,945,193 - -0.3 1,945,193 - -1.2 1,945,387 - +0.5 1,945,559 + RR42_RS09200 0.12 +1.4
Or see this region's nucleotide sequence