Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08755 and RR42_RS08760 are separated by 29 nucleotides RR42_RS08760 and RR42_RS08765 are separated by 55 nucleotides RR42_RS08765 and RR42_RS08770 are separated by 312 nucleotides
RR42_RS08755: RR42_RS08755 - molybdenum cofactor biosynthesis protein MoeA, at 1,834,084 to 1,835,208
_RS08755
RR42_RS08760: RR42_RS08760 - XRE family transcriptional regulator, at 1,835,238 to 1,835,903
_RS08760
RR42_RS08765: RR42_RS08765 - histidine kinase, at 1,835,959 to 1,837,890
_RS08765
RR42_RS08770: RR42_RS08770 - 2-nitropropane dioxygenase, at 1,838,203 to 1,839,384
_RS08770
Position (kb)
1835
1836
1837
1838 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1835.273 kb on - strand at 1835.600 kb on - strand, within RR42_RS08760 at 1836.551 kb on - strand, within RR42_RS08765 at 1836.841 kb on + strand, within RR42_RS08765 at 1837.154 kb on + strand, within RR42_RS08765 at 1837.155 kb on - strand, within RR42_RS08765 at 1837.155 kb on - strand, within RR42_RS08765 at 1837.157 kb on - strand, within RR42_RS08765 at 1837.310 kb on + strand, within RR42_RS08765 at 1837.311 kb on - strand, within RR42_RS08765 at 1837.311 kb on - strand, within RR42_RS08765 at 1837.311 kb on - strand, within RR42_RS08765 at 1837.981 kb on + strand at 1837.981 kb on + strand at 1837.981 kb on + strand at 1837.982 kb on - strand at 1837.986 kb on + strand at 1837.987 kb on - strand at 1838.133 kb on + strand at 1838.133 kb on + strand at 1838.508 kb on - strand, within RR42_RS08770
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 1,835,273 - -0.2 1,835,600 - RR42_RS08760 0.54 -1.3 1,836,551 - RR42_RS08765 0.31 -1.7 1,836,841 + RR42_RS08765 0.46 -0.8 1,837,154 + RR42_RS08765 0.62 -1.2 1,837,155 - RR42_RS08765 0.62 -2.9 1,837,155 - RR42_RS08765 0.62 +0.5 1,837,157 - RR42_RS08765 0.62 +0.4 1,837,310 + RR42_RS08765 0.70 -0.9 1,837,311 - RR42_RS08765 0.70 -0.5 1,837,311 - RR42_RS08765 0.70 -1.4 1,837,311 - RR42_RS08765 0.70 -0.5 1,837,981 + -2.5 1,837,981 + +1.2 1,837,981 + -1.8 1,837,982 - -0.3 1,837,986 + +0.4 1,837,987 - -0.4 1,838,133 + +0.3 1,838,133 + -0.5 1,838,508 - RR42_RS08770 0.26 -0.5
Or see this region's nucleotide sequence