Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03750

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03745 and RR42_RS03750 are separated by 298 nucleotidesRR42_RS03750 and RR42_RS03755 overlap by 4 nucleotides RR42_RS03745: RR42_RS03745 - LysR family transcriptional regulator, at 825,913 to 827,010 _RS03745 RR42_RS03750: RR42_RS03750 - formate dehydrogenase, at 827,309 to 827,824 _RS03750 RR42_RS03755: RR42_RS03755 - formate dehydrogenase, at 827,821 to 829,374 _RS03755 Position (kb) 827 828Strain fitness (log2 ratio) -2 -1 0 1 2at 826.553 kb on + strand, within RR42_RS03745at 826.553 kb on + strand, within RR42_RS03745at 826.850 kb on + strand, within RR42_RS03745at 826.909 kb on - strandat 827.052 kb on - strandat 827.053 kb on + strandat 827.053 kb on + strandat 827.054 kb on - strandat 827.072 kb on + strandat 827.072 kb on + strandat 827.072 kb on + strandat 827.072 kb on + strandat 827.072 kb on + strandat 827.072 kb on + strandat 827.072 kb on + strandat 827.072 kb on + strandat 827.072 kb on + strandat 827.072 kb on + strandat 827.073 kb on - strandat 827.073 kb on - strandat 827.073 kb on - strandat 827.073 kb on - strandat 827.073 kb on - strandat 827.073 kb on - strandat 827.073 kb on - strandat 827.073 kb on - strandat 827.073 kb on - strandat 827.073 kb on - strandat 827.082 kb on + strandat 827.433 kb on + strand, within RR42_RS03750at 827.433 kb on + strand, within RR42_RS03750at 827.433 kb on + strand, within RR42_RS03750at 827.433 kb on + strand, within RR42_RS03750at 827.434 kb on - strand, within RR42_RS03750at 827.434 kb on - strand, within RR42_RS03750at 827.438 kb on + strand, within RR42_RS03750at 827.438 kb on + strand, within RR42_RS03750at 827.438 kb on + strand, within RR42_RS03750at 827.438 kb on + strand, within RR42_RS03750at 827.438 kb on + strand, within RR42_RS03750at 827.438 kb on + strand, within RR42_RS03750at 827.438 kb on + strand, within RR42_RS03750at 827.439 kb on - strand, within RR42_RS03750at 827.439 kb on - strand, within RR42_RS03750at 827.439 kb on - strand, within RR42_RS03750at 827.439 kb on - strand, within RR42_RS03750at 827.519 kb on + strand, within RR42_RS03750at 827.519 kb on + strand, within RR42_RS03750at 827.519 kb on + strand, within RR42_RS03750at 827.519 kb on + strand, within RR42_RS03750at 827.519 kb on + strand, within RR42_RS03750at 827.519 kb on + strand, within RR42_RS03750at 827.519 kb on + strand, within RR42_RS03750at 827.519 kb on + strand, within RR42_RS03750at 827.519 kb on + strand, within RR42_RS03750at 827.565 kb on + strand, within RR42_RS03750at 827.687 kb on + strand, within RR42_RS03750at 827.688 kb on - strand, within RR42_RS03750at 827.688 kb on - strand, within RR42_RS03750at 828.181 kb on + strand, within RR42_RS03755at 828.182 kb on - strand, within RR42_RS03755at 828.347 kb on - strand, within RR42_RS03755at 828.475 kb on + strand, within RR42_RS03755at 828.475 kb on + strand, within RR42_RS03755at 828.476 kb on - strand, within RR42_RS03755at 828.476 kb on - strand, within RR42_RS03755at 828.477 kb on + strand, within RR42_RS03755at 828.477 kb on + strand, within RR42_RS03755at 828.477 kb on + strand, within RR42_RS03755at 828.477 kb on + strand, within RR42_RS03755at 828.477 kb on + strand, within RR42_RS03755at 828.478 kb on - strand, within RR42_RS03755at 828.481 kb on + strand, within RR42_RS03755at 828.481 kb on + strand, within RR42_RS03755at 828.481 kb on + strand, within RR42_RS03755at 828.497 kb on - strand, within RR42_RS03755at 828.622 kb on + strand, within RR42_RS03755at 828.622 kb on + strand, within RR42_RS03755at 828.797 kb on - strand, within RR42_RS03755at 828.797 kb on - strand, within RR42_RS03755

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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826,553 + RR42_RS03745 0.58 -1.0
826,553 + RR42_RS03745 0.58 -0.9
826,850 + RR42_RS03745 0.85 +1.1
826,909 - -0.5
827,052 - -0.0
827,053 + +0.6
827,053 + +0.3
827,054 - -1.8
827,072 + -0.1
827,072 + -0.4
827,072 + -0.8
827,072 + +0.2
827,072 + -0.2
827,072 + +0.6
827,072 + +0.2
827,072 + -1.8
827,072 + -0.4
827,072 + -0.2
827,073 - +0.8
827,073 - +2.5
827,073 - -0.7
827,073 - +1.6
827,073 - -0.1
827,073 - +1.0
827,073 - -0.6
827,073 - +0.2
827,073 - +0.0
827,073 - +0.1
827,082 + +0.1
827,433 + RR42_RS03750 0.24 -0.2
827,433 + RR42_RS03750 0.24 +1.7
827,433 + RR42_RS03750 0.24 +1.5
827,433 + RR42_RS03750 0.24 -1.0
827,434 - RR42_RS03750 0.24 -0.0
827,434 - RR42_RS03750 0.24 -0.1
827,438 + RR42_RS03750 0.25 -0.4
827,438 + RR42_RS03750 0.25 +1.3
827,438 + RR42_RS03750 0.25 -1.1
827,438 + RR42_RS03750 0.25 +1.2
827,438 + RR42_RS03750 0.25 -1.1
827,438 + RR42_RS03750 0.25 -0.4
827,438 + RR42_RS03750 0.25 +0.3
827,439 - RR42_RS03750 0.25 +0.1
827,439 - RR42_RS03750 0.25 +0.3
827,439 - RR42_RS03750 0.25 +0.0
827,439 - RR42_RS03750 0.25 -0.7
827,519 + RR42_RS03750 0.41 -0.1
827,519 + RR42_RS03750 0.41 +0.1
827,519 + RR42_RS03750 0.41 +0.9
827,519 + RR42_RS03750 0.41 +0.3
827,519 + RR42_RS03750 0.41 +0.6
827,519 + RR42_RS03750 0.41 -1.8
827,519 + RR42_RS03750 0.41 +1.1
827,519 + RR42_RS03750 0.41 -0.8
827,519 + RR42_RS03750 0.41 +0.1
827,565 + RR42_RS03750 0.50 -1.7
827,687 + RR42_RS03750 0.73 -0.5
827,688 - RR42_RS03750 0.73 +0.5
827,688 - RR42_RS03750 0.73 -1.2
828,181 + RR42_RS03755 0.23 +0.2
828,182 - RR42_RS03755 0.23 +0.9
828,347 - RR42_RS03755 0.34 +0.2
828,475 + RR42_RS03755 0.42 +0.7
828,475 + RR42_RS03755 0.42 -1.3
828,476 - RR42_RS03755 0.42 +1.6
828,476 - RR42_RS03755 0.42 +2.0
828,477 + RR42_RS03755 0.42 +0.5
828,477 + RR42_RS03755 0.42 -0.3
828,477 + RR42_RS03755 0.42 +1.0
828,477 + RR42_RS03755 0.42 -0.3
828,477 + RR42_RS03755 0.42 -1.0
828,478 - RR42_RS03755 0.42 +1.6
828,481 + RR42_RS03755 0.42 -0.1
828,481 + RR42_RS03755 0.42 -1.1
828,481 + RR42_RS03755 0.42 +0.0
828,497 - RR42_RS03755 0.44 -1.7
828,622 + RR42_RS03755 0.52 -0.2
828,622 + RR42_RS03755 0.52 -1.3
828,797 - RR42_RS03755 0.63 +0.6
828,797 - RR42_RS03755 0.63 +0.2

Or see this region's nucleotide sequence