Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03505 and RR42_RS03510 are separated by 477 nucleotides RR42_RS03510 and RR42_RS03515 are separated by 63 nucleotides RR42_RS03515 and RR42_RS03520 are separated by 49 nucleotides
RR42_RS03505: RR42_RS03505 - replication/virulence associated protein, at 778,131 to 778,712
_RS03505
RR42_RS03510: RR42_RS03510 - ATPase AAA, at 779,190 to 781,910
_RS03510
RR42_RS03515: RR42_RS03515 - hypothetical protein, at 781,974 to 782,507
_RS03515
RR42_RS03520: RR42_RS03520 - type VI secretion protein EvpB, at 782,557 to 784,050
_RS03520
Position (kb) 779
780
781
782 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 778.426 kb on - strand, within RR42_RS03505 at 779.090 kb on + strand at 779.491 kb on - strand, within RR42_RS03510 at 779.609 kb on - strand, within RR42_RS03510 at 779.679 kb on + strand, within RR42_RS03510 at 779.688 kb on - strand, within RR42_RS03510 at 779.769 kb on + strand, within RR42_RS03510 at 780.417 kb on + strand, within RR42_RS03510 at 780.417 kb on + strand, within RR42_RS03510 at 780.417 kb on + strand, within RR42_RS03510 at 780.418 kb on - strand, within RR42_RS03510 at 780.418 kb on - strand, within RR42_RS03510 at 780.418 kb on - strand, within RR42_RS03510 at 780.828 kb on + strand, within RR42_RS03510 at 780.829 kb on - strand, within RR42_RS03510 at 781.114 kb on - strand, within RR42_RS03510 at 781.203 kb on + strand, within RR42_RS03510 at 781.317 kb on + strand, within RR42_RS03510 at 781.318 kb on - strand, within RR42_RS03510 at 781.318 kb on - strand, within RR42_RS03510 at 781.543 kb on - strand, within RR42_RS03510 at 781.842 kb on + strand at 781.843 kb on - strand at 781.843 kb on - strand at 781.973 kb on + strand at 781.973 kb on + strand at 781.974 kb on - strand at 782.030 kb on - strand, within RR42_RS03515 at 782.055 kb on + strand, within RR42_RS03515 at 782.235 kb on - strand, within RR42_RS03515 at 782.376 kb on + strand, within RR42_RS03515 at 782.377 kb on - strand, within RR42_RS03515 at 782.377 kb on - strand, within RR42_RS03515 at 782.377 kb on - strand, within RR42_RS03515 at 782.474 kb on + strand at 782.526 kb on + strand at 782.526 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 778,426 - RR42_RS03505 0.51 +0.1 779,090 + -0.9 779,491 - RR42_RS03510 0.11 -1.2 779,609 - RR42_RS03510 0.15 -0.4 779,679 + RR42_RS03510 0.18 +0.8 779,688 - RR42_RS03510 0.18 -0.4 779,769 + RR42_RS03510 0.21 +0.9 780,417 + RR42_RS03510 0.45 +1.2 780,417 + RR42_RS03510 0.45 +0.6 780,417 + RR42_RS03510 0.45 +1.1 780,418 - RR42_RS03510 0.45 -0.1 780,418 - RR42_RS03510 0.45 +0.6 780,418 - RR42_RS03510 0.45 +0.5 780,828 + RR42_RS03510 0.60 -1.6 780,829 - RR42_RS03510 0.60 +0.0 781,114 - RR42_RS03510 0.71 -0.7 781,203 + RR42_RS03510 0.74 -0.2 781,317 + RR42_RS03510 0.78 -0.7 781,318 - RR42_RS03510 0.78 +0.8 781,318 - RR42_RS03510 0.78 +4.8 781,543 - RR42_RS03510 0.86 -0.2 781,842 + -1.1 781,843 - -0.9 781,843 - +0.5 781,973 + +0.2 781,973 + +0.1 781,974 - +0.9 782,030 - RR42_RS03515 0.10 -0.2 782,055 + RR42_RS03515 0.15 -1.6 782,235 - RR42_RS03515 0.49 -0.2 782,376 + RR42_RS03515 0.75 +0.1 782,377 - RR42_RS03515 0.75 -1.3 782,377 - RR42_RS03515 0.75 +0.3 782,377 - RR42_RS03515 0.75 +1.0 782,474 + +1.1 782,526 + -0.5 782,526 + -0.7
Or see this region's nucleotide sequence