Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03195 and RR42_RS03200 are separated by 361 nucleotides RR42_RS03200 and RR42_RS03205 are separated by 437 nucleotides RR42_RS03205 and RR42_RS03210 are separated by 70 nucleotides
RR42_RS03195: RR42_RS03195 - LuxR family transcriptional regulator, at 707,010 to 708,137
_RS03195
RR42_RS03200: RR42_RS03200 - phosphoglycerate kinase, at 708,499 to 709,707
_RS03200
RR42_RS03205: RR42_RS03205 - hypothetical protein, at 710,145 to 710,576
_RS03205
RR42_RS03210: RR42_RS03210 - pyruvate kinase, at 710,647 to 712,083
_RS03210
Position (kb) 708
709
710 Strain fitness (log2 ratio) -2
-1
0
1
2 at 707.743 kb on + strand, within RR42_RS03195 at 707.743 kb on + strand, within RR42_RS03195 at 707.743 kb on + strand, within RR42_RS03195 at 707.743 kb on + strand, within RR42_RS03195 at 707.743 kb on + strand, within RR42_RS03195 at 707.744 kb on - strand, within RR42_RS03195 at 707.744 kb on - strand, within RR42_RS03195 at 707.822 kb on - strand, within RR42_RS03195 at 707.872 kb on + strand, within RR42_RS03195 at 707.872 kb on + strand, within RR42_RS03195 at 707.872 kb on + strand, within RR42_RS03195 at 707.872 kb on + strand, within RR42_RS03195 at 707.872 kb on + strand, within RR42_RS03195 at 707.872 kb on + strand, within RR42_RS03195 at 707.873 kb on - strand, within RR42_RS03195 at 707.873 kb on - strand, within RR42_RS03195 at 707.873 kb on - strand, within RR42_RS03195 at 707.873 kb on - strand, within RR42_RS03195 at 708.100 kb on + strand at 708.100 kb on + strand at 708.101 kb on - strand at 708.101 kb on - strand at 708.101 kb on - strand at 708.101 kb on - strand at 708.101 kb on - strand at 708.101 kb on - strand at 708.191 kb on + strand at 708.197 kb on - strand at 708.248 kb on + strand at 708.249 kb on - strand at 708.264 kb on + strand at 708.264 kb on + strand at 708.264 kb on + strand at 708.264 kb on + strand at 708.265 kb on - strand at 708.265 kb on - strand at 708.265 kb on - strand at 708.265 kb on - strand at 708.265 kb on - strand at 708.265 kb on - strand at 708.285 kb on + strand at 708.285 kb on + strand at 708.285 kb on + strand at 708.286 kb on - strand at 708.286 kb on - strand at 708.310 kb on + strand at 708.310 kb on + strand at 708.310 kb on + strand at 708.310 kb on + strand at 708.311 kb on + strand at 708.311 kb on - strand at 709.938 kb on + strand at 709.938 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 707,743 + RR42_RS03195 0.65 -0.6 707,743 + RR42_RS03195 0.65 +0.5 707,743 + RR42_RS03195 0.65 +1.0 707,743 + RR42_RS03195 0.65 -0.4 707,743 + RR42_RS03195 0.65 -0.7 707,744 - RR42_RS03195 0.65 +0.4 707,744 - RR42_RS03195 0.65 -2.2 707,822 - RR42_RS03195 0.72 +0.1 707,872 + RR42_RS03195 0.76 +2.2 707,872 + RR42_RS03195 0.76 +0.2 707,872 + RR42_RS03195 0.76 +0.2 707,872 + RR42_RS03195 0.76 +0.6 707,872 + RR42_RS03195 0.76 -0.0 707,872 + RR42_RS03195 0.76 +1.9 707,873 - RR42_RS03195 0.77 +0.1 707,873 - RR42_RS03195 0.77 +1.1 707,873 - RR42_RS03195 0.77 +1.9 707,873 - RR42_RS03195 0.77 -0.6 708,100 + +0.5 708,100 + -1.3 708,101 - -0.4 708,101 - +0.8 708,101 - -1.5 708,101 - -0.4 708,101 - +0.2 708,101 - +0.1 708,191 + +1.1 708,197 - -1.1 708,248 + -0.6 708,249 - -0.1 708,264 + -2.0 708,264 + -2.2 708,264 + -0.5 708,264 + +0.7 708,265 - -1.1 708,265 - +0.0 708,265 - -0.9 708,265 - +1.7 708,265 - -0.8 708,265 - +0.5 708,285 + -1.4 708,285 + +0.7 708,285 + +0.5 708,286 - -0.3 708,286 - -0.4 708,310 + +2.5 708,310 + -2.0 708,310 + -0.6 708,310 + -0.6 708,311 + -0.8 708,311 - -0.5 709,938 + +1.0 709,938 + +0.5
Or see this region's nucleotide sequence