Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00800 and RR42_RS00805 are separated by 278 nucleotides RR42_RS00805 and RR42_RS00810 are separated by 89 nucleotides RR42_RS00810 and RR42_RS00815 are separated by 134 nucleotides
RR42_RS00800: RR42_RS00800 - histidine kinase, at 197,888 to 199,342
_RS00800
RR42_RS00805: RR42_RS00805 - membrane protein, at 199,621 to 199,794
_RS00805
RR42_RS00810: RR42_RS00810 - membrane protein, at 199,884 to 200,045
_RS00810
RR42_RS00815: RR42_RS00815 - hypothetical protein, at 200,180 to 200,596
_RS00815
Position (kb) 199
200 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 198.766 kb on + strand, within RR42_RS00800 at 198.767 kb on - strand, within RR42_RS00800 at 198.826 kb on - strand, within RR42_RS00800 at 198.960 kb on + strand, within RR42_RS00800 at 199.101 kb on + strand, within RR42_RS00800 at 199.102 kb on - strand, within RR42_RS00800 at 199.104 kb on + strand, within RR42_RS00800 at 199.105 kb on - strand, within RR42_RS00800 at 199.116 kb on + strand, within RR42_RS00800 at 199.116 kb on + strand, within RR42_RS00800 at 199.117 kb on - strand, within RR42_RS00800 at 199.203 kb on - strand at 199.228 kb on + strand at 199.228 kb on + strand at 199.228 kb on + strand at 199.229 kb on - strand at 199.229 kb on - strand at 199.229 kb on - strand at 199.230 kb on + strand at 199.230 kb on + strand at 199.231 kb on - strand at 199.231 kb on - strand at 199.285 kb on + strand at 199.554 kb on + strand at 199.686 kb on + strand, within RR42_RS00805 at 199.686 kb on + strand, within RR42_RS00805 at 199.687 kb on - strand, within RR42_RS00805 at 199.687 kb on - strand, within RR42_RS00805 at 199.792 kb on + strand at 199.793 kb on - strand at 199.894 kb on - strand at 199.933 kb on + strand, within RR42_RS00810 at 200.174 kb on - strand at 200.419 kb on + strand, within RR42_RS00815 at 200.420 kb on - strand, within RR42_RS00815 at 200.420 kb on - strand, within RR42_RS00815 at 200.420 kb on - strand, within RR42_RS00815 at 200.471 kb on + strand, within RR42_RS00815 at 200.527 kb on + strand, within RR42_RS00815 at 200.527 kb on + strand, within RR42_RS00815 at 200.527 kb on + strand, within RR42_RS00815 at 200.648 kb on + strand at 200.672 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 198,766 + RR42_RS00800 0.60 -0.1 198,767 - RR42_RS00800 0.60 +0.5 198,826 - RR42_RS00800 0.64 -2.9 198,960 + RR42_RS00800 0.74 -1.8 199,101 + RR42_RS00800 0.83 -0.4 199,102 - RR42_RS00800 0.83 +1.1 199,104 + RR42_RS00800 0.84 -1.5 199,105 - RR42_RS00800 0.84 -2.6 199,116 + RR42_RS00800 0.84 -2.2 199,116 + RR42_RS00800 0.84 -0.7 199,117 - RR42_RS00800 0.84 -0.6 199,203 - -0.4 199,228 + -0.9 199,228 + +0.6 199,228 + -1.3 199,229 - -2.0 199,229 - -0.4 199,229 - +0.9 199,230 + +1.6 199,230 + -1.4 199,231 - +0.2 199,231 - +0.6 199,285 + -2.6 199,554 + +1.0 199,686 + RR42_RS00805 0.37 +0.7 199,686 + RR42_RS00805 0.37 -0.1 199,687 - RR42_RS00805 0.38 +2.0 199,687 - RR42_RS00805 0.38 +0.1 199,792 + +0.9 199,793 - +1.2 199,894 - +1.6 199,933 + RR42_RS00810 0.30 +2.9 200,174 - +0.5 200,419 + RR42_RS00815 0.57 +0.2 200,420 - RR42_RS00815 0.58 +1.0 200,420 - RR42_RS00815 0.58 +0.5 200,420 - RR42_RS00815 0.58 +2.6 200,471 + RR42_RS00815 0.70 +0.7 200,527 + RR42_RS00815 0.83 +0.2 200,527 + RR42_RS00815 0.83 -1.0 200,527 + RR42_RS00815 0.83 +0.1 200,648 + +0.6 200,672 - -0.3
Or see this region's nucleotide sequence